Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45508 | Canola | cytosol | 92.46 | 97.68 |
| CDY42814 | Canola | plastid | 81.34 | 75.06 |
| CDX77004 | Canola | nucleus | 51.17 | 70.78 |
| PGSC0003DMT400045541 | Potato | nucleus | 55.28 | 67.96 |
| PGSC0003DMT400045538 | Potato | nucleus | 33.47 | 59.37 |
| ATCG00190.1 | Thale cress | nucleus | 87.24 | 59.33 |
| Solyc01g017360.1.1 | Tomato | cytosol | 7.0 | 54.84 |
| Solyc12g037940.1.1 | Tomato | nucleus | 9.6 | 51.47 |
| Solyc12g035870.1.1 | Tomato | extracellular | 19.07 | 34.92 |
| CDX77005 | Canola | cytosol | 5.49 | 11.14 |
| CDY21192 | Canola | nucleus, peroxisome, plastid | 5.35 | 7.07 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:2.40.270.10 | Gene3D:2.40.50.100 | Gene3D:3.90.1100.10 | MapMan:35.1 |
| GO:A0A078FXW2 | UniProt:A0A078FXW2 | EnsemblPlants:CDY17582 | ProteinID:CDY17582 | ProteinID:CDY17582.1 | InterPro:DNA-dir_RNAP_su2_dom |
| InterPro:DNA-dir_RNAP_su2_hyb_sf | InterPro:DNA-dir_RNA_pol_su2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032549 | EnsemblPlantsGene:GSBRNA2T00001772001 | InterPro:IPR037033 |
| PFAM:PF00562 | PFAM:PF04561 | PFAM:PF04565 | PANTHER:PTHR20856 | PANTHER:PTHR20856:SF20 | InterPro:RNA_pol_Rpb2_2 |
| InterPro:RNA_pol_Rpb2_3 | SUPFAM:SSF64484 | UniParc:UPI0004EF2930 | SEG:seg | : | : |
Description
BnaC01g27060DBnaC01g27060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXW2]
Coordinates
chrLK032075:+:668044..671620
Molecular Weight (calculated)
81154.1 Da
IEP (calculated)
9.492
GRAVY (calculated)
-0.284
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLLVNNQPQ LSINNIFLLP RDILAAADHL IGMKFGMGTL DDMNHLKNKR IRSVADLLQD QLGLALARLE NVVKGTIGGA IRHKLIPTPQ NLVTSTPLTT
101: TYESFFGLHP LSQVLDRTNP LTQIVHGRKL SYLGPGGLTG RTANFRIRDI HPSHYGRICP IDTSEGINVG LIGSLSIHAR IGDWGSLESP FYELVEKSKK
201: ARIRMLFLSP SQDEYYMIAA GNSLALNRGI QEEQAVPARY RQEFLTIAWE EVHLRSIFPF QYFSIGASLI PFIEHNDANR ALMSSNMQRQ AVPLSRSEKC
301: IVGTGLERQV ALDSGVPAIA EHEGKILYTD TEKIILSGNE NTLSIPLIMY QRSNKNTCMH QKPQVRRGKC IKKGQILADG AATVGGELAL GKNILVAYMP
401: WEGYNFEDAV LISECLVYGD IYTSFHIRKY EIQTHVTTQG PERITKEIPH LEGRLLRNLD KNGIVMLGSW VETGDILVGK LTPQMAKESS YAPEDRLLRA
501: ILGIQDMPYL QDGRPVDMVF NPLGVPSRMN VGQIFECSLG LAGSLLDRHY RIAPFDERYE QEASRKLVFS ELYEASKQTA NPWVFEPEYP GKSRIFDGRT
601: GDPFEQPVII GKPYILKLIH QVDDKIHGRS SGHYALVTQQ PLRGRSKHAS QRIPTSGVNA ISHPFLSQGR PVRGLPAIGN GISRRGRRRG RSKPPNPTGQ
701: GRAGHRFESC HLSCGSSCVV HSLRSTNPC
101: TYESFFGLHP LSQVLDRTNP LTQIVHGRKL SYLGPGGLTG RTANFRIRDI HPSHYGRICP IDTSEGINVG LIGSLSIHAR IGDWGSLESP FYELVEKSKK
201: ARIRMLFLSP SQDEYYMIAA GNSLALNRGI QEEQAVPARY RQEFLTIAWE EVHLRSIFPF QYFSIGASLI PFIEHNDANR ALMSSNMQRQ AVPLSRSEKC
301: IVGTGLERQV ALDSGVPAIA EHEGKILYTD TEKIILSGNE NTLSIPLIMY QRSNKNTCMH QKPQVRRGKC IKKGQILADG AATVGGELAL GKNILVAYMP
401: WEGYNFEDAV LISECLVYGD IYTSFHIRKY EIQTHVTTQG PERITKEIPH LEGRLLRNLD KNGIVMLGSW VETGDILVGK LTPQMAKESS YAPEDRLLRA
501: ILGIQDMPYL QDGRPVDMVF NPLGVPSRMN VGQIFECSLG LAGSLLDRHY RIAPFDERYE QEASRKLVFS ELYEASKQTA NPWVFEPEYP GKSRIFDGRT
601: GDPFEQPVII GKPYILKLIH QVDDKIHGRS SGHYALVTQQ PLRGRSKHAS QRIPTSGVNA ISHPFLSQGR PVRGLPAIGN GISRRGRRRG RSKPPNPTGQ
701: GRAGHRFESC HLSCGSSCVV HSLRSTNPC
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Arabidopsis Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.