Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g017360.1.1 | Tomato | cytosol | 19.95 | 88.17 |
| CDX77004 | Canola | nucleus | 95.13 | 74.19 |
| PGSC0003DMT400045541 | Potato | nucleus | 100.0 | 69.31 |
| CDY42814 | Canola | plastid | 90.75 | 47.22 |
| ATCG00190.1 | Thale cress | nucleus | 95.38 | 36.57 |
| CDY45508 | Canola | cytosol | 58.88 | 35.07 |
| CDY17582 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 59.37 | 33.47 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:2.40.270.10 | Gene3D:3.90.1800.10 | MapMan:35.1 | InterPro:DNA-dir_RNAP_su2_dom |
| InterPro:DNA-dir_RNAP_su2_hyb_sf | InterPro:DNA-dir_RNA_pol_su2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 |
| GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0032549 | InterPro:IPR037033 | UniProt:M1BHU1 |
| PFAM:PF00562 | PFAM:PF04560 | EnsemblPlantsGene:PGSC0003DMG401017663 | PGSC:PGSC0003DMG401017663 | EnsemblPlants:PGSC0003DMT400045538 | ScanProsite:PS01166 |
| PANTHER:PTHR20856 | PANTHER:PTHR20856:SF20 | InterPro:RNA_pol_Rpb2_7 | InterPro:RNA_pol_bsu_CS | SUPFAM:SSF64484 | UniParc:UPI000294D884 |
Description
DNA-directed RNA polymerase subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG401017663]
Coordinates
chr9:+:43790327..43791562
Molecular Weight (calculated)
46649.2 Da
IEP (calculated)
9.066
GRAVY (calculated)
-0.412
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MPWEGYNFED AVLISERLVY EDIYTSFHIR KYEIHTHVTS QGPEKVTNEI PHLEAHLLRN LDKKGIVMLG SWVETGDILV GKLTPQVVKE SSYAPEDRLL
101: RAILGIQVST SKETCLKLPI GGRGRVIDVR WIQKRGGSSY NPETIRVYIS QKREIKVGDK VAGRHGNKGI ISKILPRQDM PYLQDGRSVD MVFNPLGVPS
201: RMNVGQIFEC SLGLAGSLLD RHYRIAPFDE RYEQEASRKL VFSELYEASK QTANPWVFEP EYPGKSRIFD GRTGNPFEQP VIIGKPYILK LIHQVDDKIH
301: GRSSGHYALV TQQPLRGRAK QGGQRVGEME VWALEGFGVA HILQEMLTYK SDHIRARQEV LGTTIIGGTI PNPEDAPESF RLLVRELRSL ALELNHFLVS
401: EKNFQINRKE A
101: RAILGIQVST SKETCLKLPI GGRGRVIDVR WIQKRGGSSY NPETIRVYIS QKREIKVGDK VAGRHGNKGI ISKILPRQDM PYLQDGRSVD MVFNPLGVPS
201: RMNVGQIFEC SLGLAGSLLD RHYRIAPFDE RYEQEASRKL VFSELYEASK QTANPWVFEP EYPGKSRIFD GRTGNPFEQP VIIGKPYILK LIHQVDDKIH
301: GRSSGHYALV TQQPLRGRAK QGGQRVGEME VWALEGFGVA HILQEMLTYK SDHIRARQEV LGTTIIGGTI PNPEDAPESF RLLVRELRSL ALELNHFLVS
401: EKNFQINRKE A
0001: MLGDEKEGTS AIPGFNQIQF EGFYRFIDQG LIEELAKFPK IEDIDHEIEF QLFVETYQLV EPLIKERDAV YESLTYSSEL YVSAGLIWKT SRNMQEQRIF
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
0101: IGNIPLMNSL GTSIVNGIYR IVINQILQSP GIYYQSELDH NGISVYTGTI ISDWGGRLEL EIDKKARIWA RVSRKQKISI LVLSSAMGLN LREILENVCY
0201: PEIFLSFLTD KEKKKIGSKE NAILEFYQQF SCVGGDPIFS ESLCKELQKK FFHQRCELGR IGRRNINWRL NLNIPQNNIF LLPRDVLAAA DHLIGMKFGM
0301: GTLDDMNHLK NKRIRSVADL LQDQLGLALA RLENVVKGTI SGAIRHKLIP TPQNLVTSTP LTTTYESFFG LHPLSQVLDR TNPLTQIVHG RKLSYLGPGG
0401: LTGRTANFRI RDIHPSHYGR ICPIDTSEGI NVGLIGSLSI HARIGDWGSL ESPFYELFEK SKKARIRMLF LSPSQDEYYM IAAGNSLALN RGIQEEQAVP
0501: ARYRQEFLTI AWEEVHLRSI FPFQYFSIGA SLIPFIEHND ANRALMSSNM QRQAVPLSRS EKCIVGTGLE RQVALDSGVP AIAEHEGKIL YTDTEKIVFS
0601: GNGDTLSIPL IMYQRSNKNT CMHQKPQVRR GKCIKKGQIL ADGAATVGGE LALGKNILVA YMPWEGYNFE DAVLISECLV YGDIYTSFHI RKYEIQTHVT
0701: TQGPERITKE IPHLEGRLLR NLDKNGIVML GSWVETGDIL VGKLTPQVAK ESSYAPEDRL LRAILGIQVS TSKETCLKLP IGGRGRVIDV RWVQKKGGSS
0801: YNPEIIRVYI SQKREIKVGD KVAGRHGNKG IISKILPRQD MPYLQDGRPV DMVFNPLGVP SRMNVGQIFE CSLGLAGSLL DRHYRIAPFD ERYEQEASRK
0901: LVFSELYEAS KQTANPWVFE PEYPGKSRIF DGRTGDPFEQ PVIIGKPYIL KLIHQVDDKI HGRSSGHYAL VTQQPLRGRS KQGGQRVGEM EVWALEGFGV
1001: AHILQEMLTY KSDHIRARQE VLGTTIIGGT IPKPEDAPES FRLLVRELRS LALELNHFLV SEKNFQINRK EV
Arabidopsis Description
RPOBDNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.