Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21192 | Canola | nucleus, peroxisome, plastid | 38.44 | 25.0 |
| CDX77004 | Canola | nucleus | 10.86 | 7.4 |
| HORVU7Hr1G020140.1 | Barley | cytosol | 3.06 | 6.88 |
| CDY45508 | Canola | cytosol | 11.14 | 5.8 |
| CDY42814 | Canola | plastid | 12.53 | 5.7 |
| CDY17582 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 11.14 | 5.49 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.274.100 | Gene3D:1.10.40.90 | MapMan:15.6.1.2.1.3 | Gene3D:2.40.40.20 |
| GO:A0A078CJD6 | EnsemblPlants:CDX77005 | ProteinID:CDX77005 | ProteinID:CDX77005.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016740 | EnsemblPlantsGene:GSBRNA2T00127564001 |
| PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PANTHER:PTHR19376 | InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 |
| InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 | UniParc:UPI0004EEA13F | : |
Description
BnaC04g38000D
Coordinates
chrLK031809:+:331015..333076
Molecular Weight (calculated)
41199.9 Da
IEP (calculated)
8.594
GRAVY (calculated)
-0.240
Length
359 amino acids
Sequence
(BLAST)
(BLAST)
001: MCQEKLVQEA VDTLLDNGIR GQPMRDGHNK VYKSFSDVIE GKEGRFRETL LGKRVDYSGR SVIVVGPSLS LHRCGLPREI AIELFQTFVI RGLIRQHLAS
101: NIGVAKSQIR EKKPIVWEIL QEVMQGHPVL LNRAPTLHRL GIQSFQPILV EGRTICLHPL VCKGFNADFD GDQMAVHVPL SLEAQAEARL LMFSHMNLLS
201: PAIGDPISVP TQDMLIGLYV LTSGTRRGIC ANRYNPCNRK NYQNERIYET NYKYMKEPFF CNSYDAIGAY RQKRINLDSP LWLRWQLDQR VIASKEVPIE
301: VHYESFGNYH EIYAHYLIVR SVKKQTFCIY IRTTVGHISF YREIEEAIQG FSQACSYDT
101: NIGVAKSQIR EKKPIVWEIL QEVMQGHPVL LNRAPTLHRL GIQSFQPILV EGRTICLHPL VCKGFNADFD GDQMAVHVPL SLEAQAEARL LMFSHMNLLS
201: PAIGDPISVP TQDMLIGLYV LTSGTRRGIC ANRYNPCNRK NYQNERIYET NYKYMKEPFF CNSYDAIGAY RQKRINLDSP LWLRWQLDQR VIASKEVPIE
301: VHYESFGNYH EIYAHYLIVR SVKKQTFCIY IRTTVGHISF YREIEEAIQG FSQACSYDT
001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
Arabidopsis Description
RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.