Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- peroxisome 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77005 | Canola | cytosol | 25.0 | 38.44 |
| CDX77004 | Canola | nucleus | 7.07 | 7.4 |
| CDY42814 | Canola | plastid | 8.33 | 5.82 |
| CDY45508 | Canola | cytosol | 7.07 | 5.65 |
| HORVU7Hr1G020140.1 | Barley | cytosol | 1.63 | 5.62 |
| CDY17582 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 7.07 | 5.35 |
Protein Annotations
| KEGG:00230+2.7.7.6 | KEGG:00240+2.7.7.6 | Gene3D:1.10.274.100 | Gene3D:1.10.40.90 | MapMan:15.6.1.2.1.3 | Gene3D:2.40.40.20 |
| GO:A0A078G842 | UniProt:A0A078G842 | EnsemblPlants:CDY21192 | ProteinID:CDY21192 | ProteinID:CDY21192.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0003899 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0016779 | EnsemblPlantsGene:GSBRNA2T00015397001 | PFAM:PF00623 | PFAM:PF04983 | PFAM:PF04997 | PANTHER:PTHR19376 |
| InterPro:RNA_pol_N | InterPro:RNA_pol_Rpb1_1 | InterPro:RNA_pol_Rpb1_3 | InterPro:RNA_pol_asu | SMART:SM00663 | SUPFAM:SSF64484 |
| UniParc:UPI0004EF1DAF | SEG:seg | : | : | : | : |
Description
BnaA01g34230DDNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A078G842]
Coordinates
chrLK032116:-:490101..491975
Molecular Weight (calculated)
63658.1 Da
IEP (calculated)
8.737
GRAVY (calculated)
-0.287
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGFEGGRSY SGPYPNFSFA RPITKKPTFL RLRGSFEYEI QSWKYSIPLF FTTQGFDIFR NREISTGAGA IREQLADLDL RIIIENSLVE WKQLGEEGPT
101: GNEWEDRKIV RRKDFLVRRM ELAKHFIRTN IEPEWMILCL LPVLPPELRP IIQIEGGKLM SSDINELYRR VIYRNNTLTD LLTTSRSTPG ELVMCQEKLV
201: QEAVDTLLDN GIRGQPMRDG HNKVYKSFSD VIEGKEGRFR ETLLGKRVDY SGRSVIVVGP SLSLHRCGLP REIAIELFQT FVIRGLIRQH LASNIGVAKS
301: QIREKKPIVW EILQEVMQGH PVLLNRAPTL HRLGIQSFQP ILVEGRTICL HPLVCKGFNA DFDGDQMAVH VPLSLEAQAE ARLLMFSHMN LLSPAIGDPI
401: SVPTQDMLIG LYVLTSGTRR GICANRYNPC NRKNYQNERI YETNYKYMKE PFFCNSYDAI GAYRQKRINL DSPLWLRWQL DQRVIASKEV PIEVHYESFG
501: NYHEIYAHYL IVRSVKKQTF CIYIRTTVGH ISFYREIEEA IQGFSQACSY DT
101: GNEWEDRKIV RRKDFLVRRM ELAKHFIRTN IEPEWMILCL LPVLPPELRP IIQIEGGKLM SSDINELYRR VIYRNNTLTD LLTTSRSTPG ELVMCQEKLV
201: QEAVDTLLDN GIRGQPMRDG HNKVYKSFSD VIEGKEGRFR ETLLGKRVDY SGRSVIVVGP SLSLHRCGLP REIAIELFQT FVIRGLIRQH LASNIGVAKS
301: QIREKKPIVW EILQEVMQGH PVLLNRAPTL HRLGIQSFQP ILVEGRTICL HPLVCKGFNA DFDGDQMAVH VPLSLEAQAE ARLLMFSHMN LLSPAIGDPI
401: SVPTQDMLIG LYVLTSGTRR GICANRYNPC NRKNYQNERI YETNYKYMKE PFFCNSYDAI GAYRQKRINL DSPLWLRWQL DQRVIASKEV PIEVHYESFG
501: NYHEIYAHYL IVRSVKKQTF CIYIRTTVGH ISFYREIEEA IQGFSQACSY DT
001: MIDRYKHQQL RIGLVSPQQI SAWATKIIPN GEIVGEVTKP YTFHYKTNKP EKDGLFCERI FGPIKSGICA CGNYRVIGDE KEDPKFCEQC GVEFVDSRIR
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
101: RYQMGYIKLT CPVTHVWYLK RLPSYIANLL DKPLKELEGL VYCDFSFARP ITKKPTFLRL RGSFEYEIQS WKYSIPLFFT TQGFDIFRNR EISTGAGAIR
201: EQLADLDLRI IIENSLVEWK QLGEEGPTGN EWEDRKIVRR KDFLVRRMEL AKHFIRTNIE PEWMVLCLLP VLPPELRPII QIEGGKLMSS DINELYRRVI
301: YRNNTLTDLL TTSRSTPGEL VMCQEKLVQE AVDTLLDNGI RGQPMRDGHN KVYKSFSDVI EGKEGRFRET LLGKRVDYSG RSVIVVGPSL SLHRCGLPRE
401: IAIELFQTFV IRGLIRQHLA SNIGVAKSQI REKKPIVWEI LQEVMQGHPV LLNRAPTLHR LGIQSFQPIL VEGRTICLHP LVCKGFNADF DGDQMAVHVP
501: LSLEAQAEAR LLMFSHMNLL SPAIGDPISV PTQDMLIGLY VLTSGTRRGI CANRYNPCNR KNYQNERIYE TNYKYTKEPF FCNSYDAIGA YRQKKINLDS
601: PLWLRWQLDQ RVIASREVPI EVHYESFGNY HEIYAHYLIV RSVKKENFCI YIRTTVGHIS FYREIEEAIQ GFSQACSYDT
Arabidopsis Description
RPOC1DNA-directed RNA polymerase subunit beta' [Source:UniProtKB/Swiss-Prot;Acc:P56763]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.