Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91447 | Canola | cytosol, mitochondrion | 25.93 | 85.71 |
| CDY52257 | Canola | cytosol, mitochondrion | 14.81 | 58.54 |
| AT5G07090.1 | Thale cress | mitochondrion | 94.44 | 58.4 |
| CDY54450 | Canola | cytosol | 43.21 | 57.38 |
| CDX70008 | Canola | cytosol | 94.44 | 56.88 |
| Solyc06g007360.2.1 | Tomato | plastid | 90.12 | 55.3 |
| CDY58877 | Canola | cytosol | 94.44 | 54.84 |
| CDX81032 | Canola | extracellular | 94.44 | 54.84 |
| CDY60025 | Canola | cytosol | 95.06 | 54.04 |
| CDY02821 | Canola | cytosol | 91.36 | 53.82 |
| PGSC0003DMT400052955 | Potato | cytosol | 61.73 | 53.76 |
| CDY32986 | Canola | cytosol | 95.06 | 53.47 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 87.04 | 53.41 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 87.04 | 53.41 |
| CDY14056 | Canola | cytosol | 95.68 | 53.26 |
| CDX99006 | Canola | extracellular | 94.44 | 53.12 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 86.42 | 53.03 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 86.42 | 53.03 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 86.42 | 53.03 |
| Solyc02g070360.2.1 | Tomato | nucleus | 86.42 | 53.03 |
| EER90550 | Sorghum | cytosol | 85.19 | 52.27 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 85.19 | 52.08 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 84.57 | 51.7 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 84.57 | 51.7 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 84.57 | 51.7 |
| Os02t0105900-01 | Rice | nucleus | 84.57 | 51.7 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 84.57 | 51.7 |
| EES00734 | Sorghum | cytosol | 84.57 | 51.7 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 78.4 | 51.42 |
| CDY57385 | Canola | cytosol, plastid | 94.44 | 51.34 |
| GSMUA_Achr11P... | Banana | cytosol | 77.78 | 51.01 |
| EES18108 | Sorghum | cytosol | 82.1 | 50.57 |
| CDY05015 | Canola | cytosol | 95.06 | 50.49 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 77.78 | 50.4 |
| Os05t0368300-01 | Rice | nucleus | 80.25 | 49.43 |
| CDY69841 | Canola | mitochondrion | 94.44 | 49.2 |
| CDY32700 | Canola | extracellular | 90.74 | 48.84 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 74.69 | 48.02 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 88.89 | 46.75 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 87.04 | 46.38 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 85.19 | 44.37 |
| CDY68858 | Canola | cytosol | 25.31 | 35.04 |
| CDY04355 | Canola | cytosol | 31.48 | 26.02 |
| KXG32490 | Sorghum | cytosol | 20.99 | 24.46 |
| CDY42359 | Canola | cytosol | 6.79 | 8.87 |
| CDY36197 | Canola | cytosol | 6.79 | 8.53 |
| CDY00352 | Canola | cytosol | 6.79 | 8.46 |
| CDY71580 | Canola | cytosol | 5.56 | 7.63 |
Protein Annotations
| Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | MapMan:35.1 | InterPro:40S_S4_C | GO:A0A078DQ13 |
| EnsemblPlants:CDX91445 | ProteinID:CDX91445 | ProteinID:CDX91445.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00152773001 |
| InterPro:IPR014722 | InterPro:IPR038237 | InterPro:KOW | PFAM:PD002667 | PFAM:PF00467 | PFAM:PF00900 |
| PFAM:PF08071 | PFAM:PF16121 | ScanProsite:PS00528 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 |
| InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS | InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | SMART:SM00739 |
| UniParc:UPI0004EACD18 | SEG:seg | : | : | : | : |
Description
BnaC04g07050D
Coordinates
chrLK031867:+:1011508..1012054
Molecular Weight (calculated)
18197.5 Da
IEP (calculated)
11.044
GRAVY (calculated)
-0.467
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKHLKRLNA PKHWMLDKLG GAFAPKPSSG PHKSRECLPL VLIIRIFRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
101: HKGSFETIHI QDSTGHEFAT RLGNVFTLGK GTKPWASLPK GKGIKLTIIE EARKRLSTQQ AA
101: HKGSFETIHI QDSTGHEFAT RLGNVFTLGK GTKPWASLPK GKGIKLTIIE EARKRLSTQQ AA
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
Arabidopsis Description
RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.