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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 2
  • nucleus 1
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 plasma membrane: 19502382
nucleus: 19621931
plastid: 21433289
nucleus: 23303719
nucleus: 23777608
golgi: 25047511
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 23303719 doi
Q He, L Chen, Y Xu, W Yu
State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 25047511 doi
Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han
Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0358400-01 Rice nucleus, plasma membrane 99.25 99.25
Zm00001d012878_P001 Maize plasma membrane 96.98 96.98
EER90550 Sorghum cytosol 96.23 96.59
HORVU1Hr1G021720.1 Barley cytosol 93.96 93.96
TraesCS1A01G092900.1 Wheat golgi, nucleus 93.96 93.96
TraesCS1B01G120600.1 Wheat cytosol 93.96 93.96
TraesCS1D01G101600.1 Wheat cytosol 93.96 93.96
Zm00001d034790_P001 Maize peroxisome 87.17 93.52
Os05t0368300-01 Rice nucleus 90.94 91.64
Zm00001d045775_P001 Maize cytosol 32.83 90.62
KRH08064 Soybean nucleus 90.19 90.53
KRH69777 Soybean endoplasmic reticulum 90.19 90.53
GSMUA_Achr11P... Banana cytosol 84.15 90.28
KRH73264 Soybean endoplasmic reticulum 89.81 90.15
GSMUA_Achr5P27000_001 Banana cytosol 83.77 89.88
KRH14914 Soybean nucleus 89.06 89.39
KRH65626 Soybean nucleus 89.06 89.39
KRH76010 Soybean endoplasmic reticulum 89.06 89.39
AT5G07090.1 Thale cress mitochondrion 88.3 89.31
AT5G58420.1 Thale cress mitochondrion 88.3 89.31
AT2G17360.1 Thale cress mitochondrion 87.92 89.27
Solyc06g007360.2.1 Tomato plastid 87.55 87.88
Bra028708.1-P Field mustard cytosol 86.79 87.79
VIT_13s0067g01820.t01 Wine grape cytosol 81.13 87.4
Solyc02g070360.2.1 Tomato nucleus 86.79 87.12
Solyc02g070330.2.1 Tomato mitochondrion 86.42 86.74
Solyc02g070340.2.1 Tomato mitochondrion 86.42 86.74
Solyc02g070350.2.1 Tomato nucleus, unclear 86.42 86.74
PGSC0003DMT400054543 Potato mitochondrion 86.04 86.36
Solyc02g070320.2.1 Tomato nucleus, unclear 86.04 86.36
CDX70008 Canola cytosol 86.04 84.76
CDX91445 Canola cytosol 51.7 84.57
Zm00001d005432_P003 Maize cytosol, mitochondrion 43.4 84.56
Solyc04g016350.1.1 Tomato nucleus, unclear 79.62 84.4
Zm00001d015481_P001 Maize cytosol 32.08 84.16
VIT_00s0252g00080.t01 Wine grape nucleus 33.96 82.57
CDY02821 Canola cytosol 85.28 82.18
CDY58877 Canola cytosol 86.42 82.08
VIT_08s0058g00390.t01 Wine grape mitochondrion, plastid 87.17 81.91
Zm00001d019693_P001 Maize cytosol, plastid 55.85 81.77
Bra005923.1-P Field mustard cytosol 86.04 81.72
CDX81032 Canola extracellular 85.66 81.36
CDY60025 Canola cytosol 87.17 81.05
CDY32986 Canola cytosol 86.79 79.86
CDX99006 Canola extracellular 86.42 79.51
CDY14056 Canola cytosol 86.79 79.04
GSMUA_Achr3P23970_001 Banana cytosol 90.57 78.95
GSMUA_Achr3P00760_001 Banana cytosol, plasma membrane 90.94 78.25
CDX91447 Canola cytosol, mitochondrion 14.34 77.55
CDY57385 Canola cytosol, plastid 87.17 77.52
VIT_06s0004g07150.t01 Wine grape cytosol 87.92 77.15
VIT_00s0252g00100.t01 Wine grape cytosol, mitochondrion 26.04 76.67
GSMUA_Achr2P01640_001 Banana cytosol 89.43 76.21
PGSC0003DMT400052955 Potato cytosol 53.21 75.81
CDY05015 Canola cytosol 86.42 75.08
CDY32700 Canola extracellular 84.53 74.42
CDY69841 Canola mitochondrion 87.17 74.28
Zm00001d050071_P001 Maize endoplasmic reticulum, extracellular 32.45 74.14
Zm00001d004105_P001 Maize extracellular, plastid 53.96 74.09
Bra020369.1-P Field mustard cytosol 84.15 74.09
Zm00001d035215_P001 Maize cytosol 22.26 72.84
Zm00001d037427_P001 Maize extracellular 36.98 72.59
Zm00001d030402_P001 Maize cytosol, plastid 50.94 69.59
Zm00001d006068_P001 Maize cytosol 32.83 68.5
Zm00001d005247_P001 Maize mitochondrion 35.85 66.43
Zm00001d031575_P001 Maize extracellular 35.47 64.83
Zm00001d033604_P001 Maize mitochondrion 32.45 64.66
Zm00001d033737_P001 Maize cytosol 20.75 62.5
Zm00001d031460_P001 Maize cytosol 31.32 62.41
Zm00001d000121_P001 Maize cytosol 25.28 61.47
KRH04718 Soybean cytosol 43.77 60.42
Zm00001d035647_P001 Maize cytosol 32.08 58.62
KRH04720 Soybean cytosol, endoplasmic reticulum 44.53 57.84
Zm00001d009518_P001 Maize cytosol 37.74 57.8
Zm00001d030502_P001 Maize cytosol 30.19 57.14
CDY52257 Canola cytosol, mitochondrion 8.68 56.1
Zm00001d037876_P001 Maize cytosol 57.36 56.09
Zm00001d004880_P001 Maize cytosol 22.64 56.07
Zm00001d015857_P002 Maize cytosol 26.42 55.56
Bra005118.1-P Field mustard cytosol 24.91 54.1
CDY54450 Canola cytosol 24.91 54.1
Zm00001d053283_P002 Maize cytosol 37.36 54.1
Zm00001d019999_P001 Maize cytosol 59.25 50.97
Zm00001d024029_P001 Maize cytosol 21.13 49.12
Zm00001d009343_P001 Maize mitochondrion 35.47 48.96
Zm00001d052602_P001 Maize extracellular 24.15 48.85
Zm00001d051261_P001 Maize cytosol 37.74 48.54
Zm00001d036575_P001 Maize mitochondrion 36.6 47.09
Zm00001d005030_P009 Maize cytosol 21.13 45.9
Zm00001d015887_P001 Maize cytosol 25.28 44.67
Zm00001d019486_P001 Maize cytosol 32.83 42.44
Bra033109.1-P Field mustard cytosol 17.36 39.32
CDY68858 Canola cytosol 17.36 39.32
Zm00001d010386_P002 Maize extracellular, peroxisome, plasma membrane 21.51 39.31
Zm00001d008887_P002 Maize cytosol 38.49 38.35
Zm00001d015817_P002 Maize plastid 38.49 37.09
Zm00001d016333_P001 Maize cytosol 36.98 35.0
Zm00001d031743_P001 Maize cytosol 26.04 34.33
Zm00001d045627_P001 Maize cytosol, plastid 23.02 33.89
Zm00001d050845_P002 Maize cytosol 23.77 31.98
CDY04355 Canola cytosol 22.64 30.61
Zm00001d009287_P001 Maize cytosol 15.47 30.37
Zm00001d045958_P001 Maize cytosol 39.62 28.3
Zm00001d045876_P002 Maize plasma membrane 22.64 27.91
Zm00001d021480_P001 Maize plasma membrane 24.53 25.29
Zm00001d045942_P001 Maize cytosol 36.6 24.62
Zm00001d019803_P001 Maize cytosol 22.26 24.48
Zm00001d046153_P001 Maize plastid 28.68 24.05
Zm00001d004990_P001 Maize endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid 24.91 22.76
Zm00001d013036_P001 Maize plastid 24.53 20.97
Zm00001d042154_P021 Maize plastid 36.6 20.46
Zm00001d035807_P001 Maize cytosol 25.66 19.05
CDY42359 Canola cytosol 8.3 17.74
Zm00001d001770_P002 Maize plastid 25.66 17.26
CDY71580 Canola cytosol 7.55 16.95
Zm00001d049112_P001 Maize cytosol, peroxisome, plastid 19.62 15.85
Zm00001d004587_P001 Maize plastid 14.34 15.38
CDY00352 Canola cytosol 7.17 14.62
Zm00001d036129_P001 Maize vacuole 21.51 14.11
CDY36197 Canola cytosol 6.04 12.4
Zm00001d019111_P002 Maize mitochondrion 11.7 10.58
Zm00001d005608_P001 Maize endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole 26.79 9.03
Protein Annotations
MapMan:17.1.3.1.5Gene3D:2.30.30.30Gene3D:2.40.50.740Gene3D:3.10.290.40InterPro:40S_S4_CEntrezGene:4328016
EMBL:AK102423EMBL:AK103949ProteinID:BAD28085.1ProteinID:BAF07538.1ProteinID:BAS76564.1EMBL:D25237
ProteinID:EAZ21423.1EMBL:EU267968GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0019538GO:GO:0019843GO:GO:0022627EMBL:GQ848059InterPro:IPR002942
InterPro:IPR014722InterPro:IPR038237InterPro:KOWEMBL:KP881242HAMAP:MF_00485EnsemblPlantsGene:Os02g0105900
EnsemblPlants:Os02t0105900-01UniProt:P49398PFAM:PD002667PFAM:PF00467PFAM:PF00900PFAM:PF01479
PFAM:PF08071PFAM:PF16121PIRSF:PIRSF002116ScanProsite:PS00528PFscan:PS50889PANTHER:PTHR11581
PANTHER:PTHR11581:SF10UniProt:Q0E4Q0InterPro:Rib_L2_dom2InterPro:Ribosomal_S4eInterPro:Ribosomal_S4e_NInterPro:Ribosomal_S4e_N_CS
InterPro:Ribosomal_S4e_central_regionInterPro:Ribosomal_S4e_central_sfInterPro:S4_RNA-bdSMART:SM00363SMART:SM00739UniParc:UPI00001A53E5
RefSeq:XP_015625833.1EMBL:Y15009SEG:seg:::
Description
RPS4Similar to 40S ribosomal protein S4. (Os02t0105900-01)
Coordinates
chr2:-:316837..319120
Molecular Weight (calculated)
29866.7 Da
IEP (calculated)
10.798
GRAVY (calculated)
-0.434
Length
265 amino acids
Sequence
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILIIRN RLKYALTYRE VISILMQRHV LVDGKVRTDK TYPAGFMDVI SIPKTGENYR
101: LLYDTKGRFR LQSVKDEDAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPIIKANDTI KIDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKNREK
201: HKGSFETIHV EDALGHQFAT RLGNVFTIGK GNKPWVSLPK GKGIKLSIIE EQRKRDAAAQ AAANA
Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.