CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G58420.1	Thale cress	mitochondrion	88.77	96.56
CDX91445	Canola	cytosol	54.04	95.06
CDX70008	Canola	cytosol	88.77	94.05
Solyc06g007360.2.1	Tomato	plastid	84.91	91.67
CDX81032	Canola	extracellular	88.07	89.96
CDY58877	Canola	cytosol	88.07	89.96
CDY02821	Canola	cytosol	86.67	89.82
CDY32986	Canola	cytosol	90.18	89.24
EER90550	Sorghum	cytosol	82.46	89.02
PGSC0003DMT400054543	Potato	mitochondrion	82.46	89.02
Solyc02g070330.2.1	Tomato	mitochondrion	82.46	89.02
Solyc02g070340.2.1	Tomato	mitochondrion	82.46	89.02
Solyc02g070350.2.1	Tomato	nucleus, unclear	82.46	89.02
Solyc02g070360.2.1	Tomato	nucleus	82.46	89.02
Solyc02g070320.2.1	Tomato	nucleus, unclear	82.11	88.64
CDX99006	Canola	extracellular	89.47	88.54
GSMUA_Achr5P27000_001	Banana	cytosol	76.14	87.85
GSMUA_Achr11P...	Banana	cytosol	76.14	87.85
TraesCS1A01G092900.1	Wheat	golgi, nucleus	81.4	87.55
TraesCS1B01G120600.1	Wheat	cytosol	81.4	87.55
Os01t0358400-01	Rice	nucleus, plasma membrane	81.4	87.55
HORVU1Hr1G021720.1	Barley	cytosol	81.4	87.55
TraesCS1D01G101600.1	Wheat	cytosol	81.4	87.55
EES00734	Sorghum	cytosol	81.4	87.55
CDY14056	Canola	cytosol	89.12	87.29
Os02t0105900-01	Rice	nucleus	81.05	87.17
CDY57385	Canola	cytosol, plastid	90.88	86.91
Solyc04g016350.1.1	Tomato	nucleus, unclear	76.14	86.8
EES18108	Sorghum	cytosol	79.3	85.93
CDX91447	Canola	cytosol, mitochondrion	14.74	85.71
CDY69841	Canola	mitochondrion	92.63	84.89
Os05t0368300-01	Rice	nucleus	78.25	84.79
CDY05015	Canola	cytosol	89.47	83.61
CDY32700	Canola	extracellular	86.67	82.06
TraesCS1A01G232700.1	Wheat	cytosol	71.93	81.35
PGSC0003DMT400052955	Potato	cytosol	52.98	81.18
GSMUA_Achr3P23970_001	Banana	cytosol	83.86	78.62
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	84.56	78.25
GSMUA_Achr2P01640_001	Banana	cytosol	82.81	75.88
KXG32490	Sorghum	cytosol	35.44	72.66
CDY54450	Canola	cytosol	25.96	60.66
CDY52257	Canola	cytosol, mitochondrion	8.42	58.54
CDY68858	Canola	cytosol	16.84	41.03
CDY04355	Canola	cytosol	22.11	32.14
CDY42359	Canola	cytosol	7.37	16.94
CDY00352	Canola	cytosol	7.37	16.15
CDY71580	Canola	cytosol	6.67	16.1
CDY36197	Canola	cytosol	5.96	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078J686
UniProt:A0A078J686	EnsemblPlants:CDY60025	ProteinID:CDY60025	ProteinID:CDY60025.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00028043001
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739
UniParc:UPI0004EEE615	SEG:seg	:	:	:	:

Description

BnaAnng16450D40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:A0A078J686]

Coordinates

chrLK033832:-:33015..34876

Molecular Weight (calculated)

32461.9 Da

IEP (calculated)

10.700

GRAVY (calculated)

-0.449

Length

285 amino acids

Sequence
(BLAST)

001: MRENFVTWND SLYIEAVCIG ATHMARGLKK HLKRLNAPKH WMLDKLGGAF APKPSSGPHK SRECLPLVLI IRNRLKYALT YREVISILMQ RHIQVDGKVR
101: TDKTYPAGFM DVISIPKTNE NFRLLYDTKG RFRLHSIRDE EAKFKLCKVR TIQVGQKGIP YLNTYDGRTI RYPDPLIKPN DTIKLDLEEN KIVEFIKFDV
201: GNVVMVTGGR NRGRVGVIKN REKHKGSFET IHIQDSTGHE FATRLGNVFT LGKGTKPWVS LPKGKGIKLT IIEEAKKRLA GQQAA

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.