Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52257 | Canola | cytosol, mitochondrion | 19.39 | 92.68 |
| CDY68858 | Canola | cytosol | 29.08 | 48.72 |
| CDY54450 | Canola | cytosol | 20.41 | 32.79 |
| CDX91445 | Canola | cytosol | 26.02 | 31.48 |
| PGSC0003DMT400052955 | Potato | cytosol | 23.98 | 25.27 |
| AT5G07090.1 | Thale cress | mitochondrion | 32.65 | 24.43 |
| Solyc06g007360.2.1 | Tomato | plastid | 31.63 | 23.48 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 29.59 | 23.48 |
| GSMUA_Achr11P... | Banana | cytosol | 29.08 | 23.08 |
| CDY02821 | Canola | cytosol | 32.14 | 22.91 |
| CDX70008 | Canola | cytosol | 31.12 | 22.68 |
| Os02t0105900-01 | Rice | nucleus | 30.61 | 22.64 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 30.61 | 22.64 |
| CDY58877 | Canola | cytosol | 32.14 | 22.58 |
| CDX81032 | Canola | extracellular | 32.14 | 22.58 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 30.1 | 22.35 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 30.1 | 22.35 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 30.1 | 22.35 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 30.1 | 22.35 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 30.1 | 22.35 |
| Solyc02g070360.2.1 | Tomato | nucleus | 30.1 | 22.35 |
| EER90550 | Sorghum | cytosol | 30.1 | 22.35 |
| EES00734 | Sorghum | cytosol | 30.1 | 22.26 |
| CDY60025 | Canola | cytosol | 32.14 | 22.11 |
| Os05t0368300-01 | Rice | nucleus | 29.59 | 22.05 |
| EES18108 | Sorghum | cytosol | 29.59 | 22.05 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 29.59 | 21.89 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 29.59 | 21.89 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 29.59 | 21.89 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 29.59 | 21.89 |
| CDY14056 | Canola | cytosol | 32.14 | 21.65 |
| CDX99006 | Canola | extracellular | 31.12 | 21.18 |
| CDY32986 | Canola | cytosol | 31.12 | 21.18 |
| CDY32700 | Canola | extracellular | 32.14 | 20.93 |
| CDY05015 | Canola | cytosol | 32.14 | 20.66 |
| CDY57385 | Canola | cytosol, plastid | 31.12 | 20.47 |
| KXG32490 | Sorghum | cytosol | 14.29 | 20.14 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 31.12 | 20.07 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 25.51 | 20.0 |
| CDY69841 | Canola | mitochondrion | 31.63 | 19.94 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 25.51 | 19.84 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 31.12 | 19.81 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 30.61 | 19.29 |
| CDY42359 | Canola | cytosol | 5.61 | 8.87 |
| CDY36197 | Canola | cytosol | 5.61 | 8.53 |
| CDY71580 | Canola | cytosol | 5.1 | 8.47 |
| CDY00352 | Canola | cytosol | 4.59 | 6.92 |
| CDX91447 | Canola | cytosol, mitochondrion | 1.53 | 6.12 |
Protein Annotations
| Gene3D:2.30.30.30 | MapMan:35.2 | GO:A0A078EQX4 | EnsemblPlants:CDY04355 | ProteinID:CDY04355 | ProteinID:CDY04355.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00118281001 | InterPro:IPR014722 | PFAM:PF08071 | ScanProsite:PS00528 |
| PANTHER:PTHR11581 | PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS |
| UniParc:UPI0004EE194D | SEG:seg | : | : | : | : |
Description
BnaC04g18380D
Coordinates
chrLK031952:+:505111..507572
Molecular Weight (calculated)
22359.4 Da
IEP (calculated)
9.993
GRAVY (calculated)
-0.144
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MICDDLSYTH EGVPDRFKTI EYYGFTSSYQ IQLYPYSFIF NSLYSSPTQA AITTDLSLTV AEDLSTLCLV LYPTWLLRLV QFPLSLMKAG RLCISFAKAI
101: GLKKHMKRLN APKHWMLGKL GVRTKGHLFP EQTIKLDLEE KKIVEFIKLD FGNVVMVTGG RNRGRVGVIR NRTKLKGSFE TTTTYKTQQD MSLQQG
101: GLKKHMKRLN APKHWMLGKL GVRTKGHLFP EQTIKLDLEE KKIVEFIKLD FGNVVMVTGG RNRGRVGVIR NRTKLKGSFE TTTTYKTQQD MSLQQG
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.