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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • nucleus 1
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d012878_P001 Maize plasma membrane 99.62 99.25
EES00734 Sorghum cytosol 97.35 96.98
Os02t0105900-01 Rice nucleus 96.59 96.23
Zm00001d034790_P001 Maize peroxisome 89.77 95.95
HORVU1Hr1G021720.1 Barley cytosol 93.18 92.83
TraesCS1A01G092900.1 Wheat golgi, nucleus 93.18 92.83
TraesCS1B01G120600.1 Wheat cytosol 93.18 92.83
TraesCS1D01G101600.1 Wheat cytosol 93.18 92.83
KRH73264 Soybean endoplasmic reticulum 92.05 92.05
EES18108 Sorghum cytosol 91.67 92.02
KRH08064 Soybean nucleus 91.67 91.67
KRH14914 Soybean nucleus 91.29 91.29
KRH69777 Soybean endoplasmic reticulum 91.29 91.29
GSMUA_Achr11P... Banana cytosol 84.85 90.69
Zm00001d045775_P001 Maize cytosol 32.95 90.62
KRH65626 Soybean nucleus 90.53 90.53
KRH76010 Soybean endoplasmic reticulum 90.53 90.53
GSMUA_Achr5P27000_001 Banana cytosol 84.47 90.28
AT5G07090.1 Thale cress mitochondrion 89.39 90.08
AT5G58420.1 Thale cress mitochondrion 89.39 90.08
AT2G17360.1 Thale cress mitochondrion 89.02 90.04
Bra028708.1-P Field mustard cytosol 88.64 89.31
Solyc06g007360.2.1 Tomato plastid 89.02 89.02
Solyc02g070360.2.1 Tomato nucleus 88.64 88.64
Solyc02g070330.2.1 Tomato mitochondrion 88.26 88.26
Solyc02g070340.2.1 Tomato mitochondrion 88.26 88.26
Solyc02g070350.2.1 Tomato nucleus, unclear 88.26 88.26
PGSC0003DMT400054543 Potato mitochondrion 87.88 87.88
Solyc02g070320.2.1 Tomato nucleus, unclear 87.88 87.88
VIT_13s0067g01820.t01 Wine grape cytosol 81.82 87.8
CDX70008 Canola cytosol 87.88 86.25
Solyc04g016350.1.1 Tomato nucleus, unclear 81.06 85.6
CDX91445 Canola cytosol 52.27 85.19
Zm00001d015481_P001 Maize cytosol 32.58 85.15
Zm00001d005432_P003 Maize cytosol, mitochondrion 43.56 84.56
VIT_00s0252g00080.t01 Wine grape nucleus 34.47 83.49
VIT_08s0058g00390.t01 Wine grape mitochondrion, plastid 88.64 82.98
Zm00001d019693_P001 Maize cytosol, plastid 56.82 82.87
CDX81032 Canola extracellular 87.5 82.8
CDY58877 Canola cytosol 87.5 82.8
CDY60025 Canola cytosol 89.02 82.46
Bra005923.1-P Field mustard cytosol 87.12 82.44
CDY02821 Canola cytosol 85.61 82.18
CDY32986 Canola cytosol 88.64 81.25
CDX99006 Canola extracellular 88.26 80.9
CDY14056 Canola cytosol 88.26 80.07
KXG32490 Sorghum cytosol 42.05 79.86
GSMUA_Achr3P23970_001 Banana cytosol 91.29 79.28
GSMUA_Achr3P00760_001 Banana cytosol, plasma membrane 92.05 78.9
CDY57385 Canola cytosol, plastid 89.02 78.86
VIT_06s0004g07150.t01 Wine grape cytosol 89.39 78.15
VIT_00s0252g00100.t01 Wine grape cytosol, mitochondrion 26.52 77.78
PGSC0003DMT400052955 Potato cytosol 54.55 77.42
GSMUA_Achr2P01640_001 Banana cytosol 90.91 77.17
Zm00001d004105_P001 Maize extracellular, plastid 56.06 76.68
CDY05015 Canola cytosol 88.26 76.39
CDX91447 Canola cytosol, mitochondrion 14.02 75.51
CDY69841 Canola mitochondrion 88.64 75.24
CDY32700 Canola extracellular 84.85 74.42
Bra020369.1-P Field mustard cytosol 84.47 74.09
Zm00001d035215_P001 Maize cytosol 22.73 74.07
Zm00001d037427_P001 Maize extracellular 37.5 73.33
Zm00001d050071_P001 Maize endoplasmic reticulum, extracellular 32.2 73.28
Zm00001d030402_P001 Maize cytosol, plastid 52.27 71.13
Zm00001d006068_P001 Maize cytosol 33.33 69.29
Zm00001d005247_P001 Maize mitochondrion 37.5 69.23
Zm00001d033604_P001 Maize mitochondrion 34.09 67.67
Zm00001d031575_P001 Maize extracellular 35.61 64.83
Zm00001d033737_P001 Maize cytosol 21.59 64.77
Zm00001d031460_P001 Maize cytosol 31.82 63.16
KRH04718 Soybean cytosol 45.08 61.98
Zm00001d000121_P001 Maize cytosol 25.38 61.47
KRH04720 Soybean cytosol, endoplasmic reticulum 46.59 60.29
Zm00001d035647_P001 Maize cytosol 32.58 59.31
Zm00001d037876_P001 Maize cytosol 59.47 57.93
Zm00001d030502_P001 Maize cytosol 30.68 57.86
Zm00001d009518_P001 Maize cytosol 37.88 57.8
CDY52257 Canola cytosol, mitochondrion 8.71 56.1
Zm00001d004880_P001 Maize cytosol 22.73 56.07
Zm00001d015857_P002 Maize cytosol 26.52 55.56
Bra005118.1-P Field mustard cytosol 25.38 54.92
CDY54450 Canola cytosol 25.38 54.92
Zm00001d053283_P002 Maize cytosol 37.5 54.1
Zm00001d024029_P001 Maize cytosol 22.73 52.63
Zm00001d019999_P001 Maize cytosol 61.36 52.6
Zm00001d009343_P001 Maize mitochondrion 35.98 49.48
Zm00001d052602_P001 Maize extracellular 24.24 48.85
Zm00001d051261_P001 Maize cytosol 37.5 48.06
Zm00001d036575_P001 Maize mitochondrion 37.12 47.57
Zm00001d005030_P009 Maize cytosol 21.21 45.9
Zm00001d015887_P001 Maize cytosol 25.38 44.67
Zm00001d019486_P001 Maize cytosol 33.33 42.93
Bra033109.1-P Field mustard cytosol 17.42 39.32
CDY68858 Canola cytosol 17.42 39.32
Zm00001d010386_P002 Maize extracellular, peroxisome, plasma membrane 21.59 39.31
Zm00001d008887_P002 Maize cytosol 39.39 39.1
Zm00001d015817_P002 Maize plastid 38.64 37.09
Zm00001d031743_P001 Maize cytosol 27.65 36.32
Zm00001d045627_P001 Maize cytosol, plastid 24.62 36.11
Zm00001d016333_P001 Maize cytosol 37.5 35.36
Zm00001d050845_P002 Maize cytosol 23.86 31.98
Zm00001d009287_P001 Maize cytosol 15.91 31.11
CDY04355 Canola cytosol 22.35 30.1
Zm00001d045876_P002 Maize plasma membrane 24.24 29.77
Zm00001d045958_P001 Maize cytosol 39.77 28.3
Zm00001d021480_P001 Maize plasma membrane 26.14 26.85
Zm00001d019803_P001 Maize cytosol 23.86 26.14
Zm00001d045942_P001 Maize cytosol 37.12 24.87
Zm00001d046153_P001 Maize plastid 28.79 24.05
Zm00001d004990_P001 Maize endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid 25.0 22.76
Zm00001d013036_P001 Maize plastid 25.0 21.29
Zm00001d042154_P021 Maize plastid 36.74 20.46
Zm00001d035807_P001 Maize cytosol 25.76 19.05
Zm00001d001770_P002 Maize plastid 25.76 17.26
Zm00001d049112_P001 Maize cytosol, peroxisome, plastid 20.08 16.16
CDY42359 Canola cytosol 7.58 16.13
CDY71580 Canola cytosol 6.82 15.25
Zm00001d004587_P001 Maize plastid 13.64 14.57
Zm00001d036129_P001 Maize vacuole 21.97 14.36
CDY00352 Canola cytosol 6.82 13.85
CDY36197 Canola cytosol 6.06 12.4
Zm00001d019111_P002 Maize mitochondrion 11.74 10.58
Zm00001d005608_P001 Maize endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole 26.89 9.03
Protein Annotations
MapMan:17.1.3.1.5Gene3D:2.30.30.30Gene3D:2.40.50.740Gene3D:3.10.290.40InterPro:40S_S4_CEntrezGene:8079649
UniProt:C5WT26EnsemblPlants:EER90550ProteinID:EER90550ProteinID:EER90550.1GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0019843GO:GO:0022627
GO:GO:0030529InterPro:IPR002942InterPro:IPR014722InterPro:IPR038237InterPro:KOWHAMAP:MF_00485
PFAM:PD002667PFAM:PF00467PFAM:PF00900PFAM:PF01479PFAM:PF08071PFAM:PF16121
PIRSF:PIRSF002116ScanProsite:PS00528PFscan:PS50889PANTHER:PTHR11581PANTHER:PTHR11581:SF10InterPro:Rib_L2_dom2
InterPro:Ribosomal_S4eInterPro:Ribosomal_S4e_NInterPro:Ribosomal_S4e_N_CSInterPro:Ribosomal_S4e_central_regionInterPro:Ribosomal_S4e_central_sfInterPro:S4_RNA-bd
SMART:SM00363SMART:SM00739EnsemblPlantsGene:SORBI_3001G018900unigene:Sbi.14077UniParc:UPI0001A8255ARefSeq:XP_002463552.1
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:+:1572016..1574513
Molecular Weight (calculated)
29904.7 Da
IEP (calculated)
10.822
GRAVY (calculated)
-0.457
Length
264 amino acids
Sequence
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILIIRN RLKYALTYRE VISILMQRHV LVDGKVRTDK TYPAGFMDVI SIPKTNENYR
101: LLYDTKGRFR LHPIRDEDAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KIDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKNREK
201: HKGSFETIHV EDSLGHQFAT RMGNVFTIGK GNKPWVSLPK GKGIKLSIIE EQRKRDAAAQ AAAA
Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.