Factsheet for VIT_13s0067g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	92.28	91.9
GSMUA_Achr5P27000_001	Banana	cytosol	92.28	91.9
AT2G17360.1	Thale cress	mitochondrion	90.65	85.44
Solyc06g007360.2.1	Tomato	plastid	91.46	85.23
AT5G07090.1	Thale cress	mitochondrion	90.65	85.11
AT5G58420.1	Thale cress	mitochondrion	90.65	85.11
Bra028708.1-P	Field mustard	cytosol	89.84	84.35
Solyc02g070360.2.1	Tomato	nucleus	89.43	83.33
Solyc02g070350.2.1	Tomato	nucleus, unclear	89.43	83.33
Solyc02g070340.2.1	Tomato	mitochondrion	89.43	83.33
Solyc02g070330.2.1	Tomato	mitochondrion	89.43	83.33
Solyc02g070320.2.1	Tomato	nucleus, unclear	89.02	82.95
PGSC0003DMT400054543	Potato	mitochondrion	89.02	82.95
PGSC0003DMT400052955	Potato	cytosol	62.6	82.8
TraesCS1B01G120600.1	Wheat	cytosol	89.02	82.64
HORVU1Hr1G021720.1	Barley	cytosol	89.02	82.64
TraesCS1A01G092900.1	Wheat	golgi, nucleus	89.02	82.64
TraesCS1D01G101600.1	Wheat	cytosol	89.02	82.64
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	94.31	82.27
EES00734	Sorghum	cytosol	88.62	82.26
EER90550	Sorghum	cytosol	87.8	81.82
Os01t0358400-01	Rice	nucleus, plasma membrane	87.8	81.51
EES18108	Sorghum	cytosol	86.99	81.37
Os02t0105900-01	Rice	nucleus	87.4	81.13
Os05t0368300-01	Rice	nucleus	86.18	80.61
Solyc04g016350.1.1	Tomato	nucleus, unclear	81.71	80.4
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	29.27	80.0
Bra005923.1-P	Field mustard	cytosol	89.43	78.85
VIT_06s0004g07150.t01	Wine grape	cytosol	96.75	78.81
TraesCS1A01G232700.1	Wheat	cytosol	76.83	75.0
GSMUA_Achr3P23970_001	Banana	cytosol	92.68	75.0
KXG32490	Sorghum	cytosol	42.28	74.82
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	93.09	74.35
VIT_00s0252g00080.t01	Wine grape	nucleus	32.11	72.48
Bra020369.1-P	Field mustard	cytosol	88.62	72.43
GSMUA_Achr2P01640_001	Banana	cytosol	91.06	72.03
Bra005118.1-P	Field mustard	cytosol	28.05	56.56
Bra033109.1-P	Field mustard	cytosol	17.89	37.61
Zm00001d010037_P001	Maize	mitochondrion	16.67	30.6
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	5.69	16.47
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	6.1	9.15
Zm00001d010387_P001	Maize	plastid	5.69	7.73
Zm00001d049253_P001	Maize	extracellular	5.69	6.48

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	ProteinID:CBI25428
ProteinID:CBI25428.3	UniProt:D7T4J6	EMBL:FN595514	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	TIGR:TC52939
UniParc:UPI0001BE2301	ArrayExpress:VIT_13s0067g01820	EnsemblPlantsGene:VIT_13s0067g01820	EnsemblPlants:VIT_13s0067g01820.t01	unigene:Vvi.9292	RefSeq:XP_002276986
RefSeq:XP_002276986.1	SEG:seg	:	:	:	:

Description

40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:D7T4J6]

Coordinates

chr13:+:999971..1002380

Molecular Weight (calculated)

27715.0 Da

IEP (calculated)

10.734

GRAVY (calculated)

-0.367

Length

246 amino acids

Sequence
(BLAST)

001: MLDKLGGAFA PKPSSGPHKS RECLPLILIL RNRLKYALTY REVIAILMQR HIFVDGKVRT DKTYPSGFMD VVSIPKTNEN FRLLYDTKGR FRLHSVRDEE
101: AKFKLCKVRS VQFGQKGIPY LNTYDGRTIR YPDPLIKAND TIKLDLESNK ITDFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGTFETI HIQDATGHEF
201: ATRLGNVFII GKGTKPWVSL PKGKGIKLSI IEEAKKRLAA QAASSA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.