Factsheet for Bra005923.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58877	Canola	cytosol	99.28	99.28
Bra028708.1-P	Field mustard	cytosol	91.76	97.71
AT5G07090.1	Thale cress	mitochondrion	88.89	94.66
Solyc06g007360.2.1	Tomato	plastid	86.38	91.29
KRH73264	Soybean	endoplasmic reticulum	85.3	90.15
KRH08064	Soybean	nucleus	84.95	89.77
VIT_13s0067g01820.t01	Wine grape	cytosol	78.85	89.43
KRH69777	Soybean	endoplasmic reticulum	84.59	89.39
KRH76010	Soybean	endoplasmic reticulum	84.23	89.02
KRH14914	Soybean	nucleus	84.23	89.02
KRH65626	Soybean	nucleus	84.23	89.02
GSMUA_Achr11P...	Banana	cytosol	78.49	88.66
GSMUA_Achr5P27000_001	Banana	cytosol	78.49	88.66
Solyc02g070360.2.1	Tomato	nucleus	83.51	88.26
Solyc02g070350.2.1	Tomato	nucleus, unclear	83.51	88.26
Solyc02g070340.2.1	Tomato	mitochondrion	83.51	88.26
Solyc02g070330.2.1	Tomato	mitochondrion	83.51	88.26
Solyc02g070320.2.1	Tomato	nucleus, unclear	83.15	87.88
PGSC0003DMT400054543	Potato	mitochondrion	83.15	87.88
EER90550	Sorghum	cytosol	82.44	87.12
TraesCS1D01G101600.1	Wheat	cytosol	82.08	86.42
HORVU1Hr1G021720.1	Barley	cytosol	82.08	86.42
TraesCS1B01G120600.1	Wheat	cytosol	82.08	86.42
Os01t0358400-01	Rice	nucleus, plasma membrane	82.08	86.42
TraesCS1A01G092900.1	Wheat	golgi, nucleus	82.08	86.42
EES00734	Sorghum	cytosol	82.08	86.42
Solyc04g016350.1.1	Tomato	nucleus, unclear	77.42	86.4
Os02t0105900-01	Rice	nucleus	81.72	86.04
EES18108	Sorghum	cytosol	79.57	84.41
Os05t0368300-01	Rice	nucleus	78.49	83.27
PGSC0003DMT400052955	Potato	cytosol	55.2	82.8
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	83.51	82.62
Bra020369.1-P	Field mustard	cytosol	87.46	81.06
TraesCS1A01G232700.1	Wheat	cytosol	72.76	80.56
VIT_00s0252g00080.t01	Wine grape	nucleus	31.18	79.82
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	87.1	78.9
GSMUA_Achr3P23970_001	Banana	cytosol	84.95	77.96
VIT_06s0004g07150.t01	Wine grape	cytosol	84.23	77.81
GSMUA_Achr2P01640_001	Banana	cytosol	83.51	74.92
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	23.66	73.33
KXG32490	Sorghum	cytosol	36.2	72.66
Bra005118.1-P	Field mustard	cytosol	27.96	63.93
KRH04718	Soybean	cytosol	43.01	62.5
Zm00001d050009_P001	Maize	plastid	21.86	62.24
KRH04720	Soybean	cytosol, endoplasmic reticulum	44.8	61.27
Bra033109.1-P	Field mustard	cytosol	17.2	41.03
Zm00001d010037_P001	Maize	mitochondrion	15.77	32.84
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	5.38	17.65
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	6.81	11.59
Zm00001d010387_P001	Maize	plastid	6.09	9.39
Zm00001d049253_P001	Maize	extracellular	5.73	7.41

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EnsemblPlantsGene:Bra005923
EnsemblPlants:Bra005923.1	EnsemblPlants:Bra005923.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	UniProt:M4CNY5	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PANTHER:PTHR11581
PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI000253F65F	SEG:seg	:

Description

AT2G17360 (E=3e-133) | 40S ribosomal protein S4 (RPS4A)

Coordinates

chrA03:+:1236291..1237824

Molecular Weight (calculated)

31752.9 Da

IEP (calculated)

10.773

GRAVY (calculated)

-0.514

Length

279 amino acids

Sequence
(BLAST)

001: MPYNTCSVTF DKLRLMLNAR GLKKHLKRLN APKHWDLDKL GGAFAPKPSS GPHKSRECLP LVLIIRNKLK YALTYREVIS SLMQRHIQVD GKVRTDKTYP
101: AGFMDVVSIP KTNENFRLLY DTKGRFRLHS VRDEEAKFKL CKVRTIQLGQ KGIPYLNTYD GRTIRYPDPL IKPNDTIKLD LEENKVVDFI KFDVGNVVMV
201: TGGRNRGRVG VIKNREKHKG SFETIHIQDS TGHEFATRLG NVFTLGKGTK PWVSLPKGKG IKLTIIEEAR KRLSAQQAA

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.