CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04718	Soybean	cytosol	60.29	64.06
PGSC0003DMT400052955	Potato	cytosol	56.86	62.37
GSMUA_Achr5P27000_001	Banana	cytosol	62.75	51.82
GSMUA_Achr11P...	Banana	cytosol	62.75	51.82
KRH14914	Soybean	nucleus	66.67	51.52
KRH08064	Soybean	nucleus	65.69	50.76
KRH73264	Soybean	endoplasmic reticulum	65.2	50.38
KRH69777	Soybean	endoplasmic reticulum	65.2	50.38
KRH76010	Soybean	endoplasmic reticulum	62.75	48.48
KRH65626	Soybean	nucleus	62.75	48.48
Bra028708.1-P	Field mustard	cytosol	62.25	48.47
AT5G07090.1	Thale cress	mitochondrion	61.76	48.09
AT5G58420.1	Thale cress	mitochondrion	61.76	48.09
AT2G17360.1	Thale cress	mitochondrion	61.27	47.89
EER90550	Sorghum	cytosol	60.29	46.59
Solyc06g007360.2.1	Tomato	plastid	60.29	46.59
KXG32490	Sorghum	cytosol	31.37	46.04
TraesCS1D01G101600.1	Wheat	cytosol	59.8	46.04
TraesCS1B01G120600.1	Wheat	cytosol	59.8	46.04
HORVU1Hr1G021720.1	Barley	cytosol	59.8	46.04
EES00734	Sorghum	cytosol	59.8	46.04
TraesCS1A01G092900.1	Wheat	golgi, nucleus	59.8	46.04
EES18108	Sorghum	cytosol	58.82	45.63
Os01t0358400-01	Rice	nucleus, plasma membrane	58.33	44.91
Bra005923.1-P	Field mustard	cytosol	61.27	44.8
Solyc02g070330.2.1	Tomato	mitochondrion	57.84	44.7
Solyc02g070320.2.1	Tomato	nucleus, unclear	57.84	44.7
PGSC0003DMT400054543	Potato	mitochondrion	57.84	44.7
Solyc02g070340.2.1	Tomato	mitochondrion	57.84	44.7
Solyc02g070350.2.1	Tomato	nucleus, unclear	57.84	44.7
Solyc02g070360.2.1	Tomato	nucleus	57.84	44.7
Os02t0105900-01	Rice	nucleus	57.84	44.53
Os05t0368300-01	Rice	nucleus	56.37	43.73
GSMUA_Achr3P23970_001	Banana	cytosol	61.76	41.45
Bra005118.1-P	Field mustard	cytosol	24.51	40.98
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	61.76	40.91
Bra020369.1-P	Field mustard	cytosol	60.29	40.86
Solyc04g016350.1.1	Tomato	nucleus, unclear	50.0	40.8
GSMUA_Achr2P01640_001	Banana	cytosol	61.76	40.51
TraesCS1A01G232700.1	Wheat	cytosol	47.06	38.1
Bra033109.1-P	Field mustard	cytosol	16.67	29.06

Protein Annotations

Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	MapMan:35.1	InterPro:40S_S4_C	UniProt:A0A0R0FEN9
EMBL:ACUP02010490	EnsemblPlantsGene:GLYMA_17G181500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	InterPro:IPR014722	InterPro:IPR038237	EnsemblPlants:KRH04720
ProteinID:KRH04720	ProteinID:KRH04720.1	PFAM:PD002667	PFAM:PF00900	PFAM:PF16121	PANTHER:PTHR11581
PANTHER:PTHR11581:SF10	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf
UniParc:UPI0006EDF3A5	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:21541282..21542215

Molecular Weight (calculated)

22779.4 Da

IEP (calculated)

9.508

GRAVY (calculated)

-0.429

Length

204 amino acids

Sequence
(BLAST)

001: MISFYLYTEA VSIPKTNENI RLLYDTKGRF RLHSIRDDEA KFGPKGIPYL NTYDGRTIHY PDPLIRANDT VKLDLEKTRL SIFIKFDVGN VVMVTGGRNR
101: GCVGVIKNRE KHKGSFKTIH VQDATGHEFA SRMGNVFTIG KGTKPWISLA KGKGIKLDCS PKGKLVEMNT QCAHADNGCG SCSYEDNSMN EPILNSKLEA
201: VTYV

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.