Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G07090.1 | Thale cress | mitochondrion | 99.62 | 99.62 |
| AT2G17360.1 | Thale cress | mitochondrion | 98.47 | 98.85 |
| Solyc06g007360.2.1 | Tomato | plastid | 92.75 | 92.05 |
| KRH73264 | Soybean | endoplasmic reticulum | 91.98 | 91.29 |
| KRH14914 | Soybean | nucleus | 91.6 | 90.91 |
| KRH08064 | Soybean | nucleus | 91.6 | 90.91 |
| KRH69777 | Soybean | endoplasmic reticulum | 91.6 | 90.91 |
| VIT_13s0067g01820.t01 | Wine grape | cytosol | 85.11 | 90.65 |
| KRH76010 | Soybean | endoplasmic reticulum | 91.22 | 90.53 |
| KRH65626 | Soybean | nucleus | 91.22 | 90.53 |
| CDY02821 | Canola | cytosol | 94.27 | 89.82 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 84.35 | 89.47 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 90.08 | 89.39 |
| EER90550 | Sorghum | cytosol | 90.08 | 89.39 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 90.08 | 89.39 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 90.08 | 89.39 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 90.08 | 89.39 |
| Solyc02g070360.2.1 | Tomato | nucleus | 90.08 | 89.39 |
| GSMUA_Achr11P... | Banana | cytosol | 83.97 | 89.07 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 89.69 | 89.02 |
| CDY60025 | Canola | cytosol | 96.56 | 88.77 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 89.69 | 88.68 |
| Os02t0105900-01 | Rice | nucleus | 89.31 | 88.3 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 88.93 | 87.92 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 88.93 | 87.92 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 88.93 | 87.92 |
| EES00734 | Sorghum | cytosol | 88.93 | 87.92 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 88.93 | 87.92 |
| CDY32986 | Canola | cytosol | 96.18 | 87.5 |
| EES18108 | Sorghum | cytosol | 87.4 | 87.07 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 82.82 | 86.8 |
| Os05t0368300-01 | Rice | nucleus | 87.02 | 86.69 |
| CDY57385 | Canola | cytosol, plastid | 96.56 | 84.9 |
| VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 90.08 | 83.69 |
| VIT_00s0252g00080.t01 | Wine grape | nucleus | 34.73 | 83.49 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 78.63 | 81.75 |
| CDY32700 | Canola | extracellular | 93.51 | 81.4 |
| PGSC0003DMT400052955 | Potato | cytosol | 57.63 | 81.18 |
| Bra020369.1-P | Field mustard | cytosol | 93.13 | 81.06 |
| CDY69841 | Canola | mitochondrion | 96.18 | 81.03 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 91.98 | 79.28 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 92.75 | 78.9 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 90.84 | 78.81 |
| VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 26.34 | 76.67 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 90.08 | 75.88 |
| KXG32490 | Sorghum | cytosol | 38.55 | 72.66 |
| Zm00001d050009_P001 | Maize | plastid | 24.05 | 64.29 |
| KRH04718 | Soybean | cytosol | 46.56 | 63.54 |
| KRH04720 | Soybean | cytosol, endoplasmic reticulum | 48.09 | 61.76 |
| Zm00001d010037_P001 | Maize | mitochondrion | 17.18 | 33.58 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 5.73 | 17.65 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 7.25 | 11.59 |
| Zm00001d010387_P001 | Maize | plastid | 7.25 | 10.5 |
| Zm00001d049253_P001 | Maize | extracellular | 4.96 | 6.02 |
Protein Annotations
| MapMan:17.1.3.1.5 | Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | InterPro:40S_S4_C | EntrezGene:835955 |
| UniProt:A0A178UQ69 | ProteinID:AED97051.1 | EMBL:AF428285 | ArrayExpress:AT5G58420 | EnsemblPlantsGene:AT5G58420 | RefSeq:AT5G58420 |
| TAIR:AT5G58420 | RefSeq:AT5G58420-TAIR-G | EnsemblPlants:AT5G58420.1 | TAIR:AT5G58420.1 | EMBL:AY070467 | EMBL:AY086206 |
| EMBL:AY143834 | Unigene:At.9748 | ProteinID:BAB10257.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022626 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR002942 |
| InterPro:IPR014722 | InterPro:IPR038237 | InterPro:KOW | HAMAP:MF_00485 | RefSeq:NP_200650.1 | ProteinID:OAO94801.1 |
| PFAM:PD002667 | PFAM:PF00467 | PFAM:PF00900 | PFAM:PF01479 | PFAM:PF08071 | PFAM:PF16121 |
| PIRSF:PIRSF002116 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006339 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00528 | PFscan:PS50889 | PANTHER:PTHR11581 |
| PANTHER:PTHR11581:SF11 | UniProt:Q8VYK6 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | InterPro:S4_RNA-bd | SMART:SM00739 | UniParc:UPI00000A6760 | SEG:seg |
Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
Coordinates
chr5:+:23619459..23621094
Molecular Weight (calculated)
29817.7 Da
IEP (calculated)
10.894
GRAVY (calculated)
-0.497
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.