Factsheet for VIT_06s0004g07150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01820.t01	Wine grape	cytosol	78.81	96.75
GSMUA_Achr5P27000_001	Banana	cytosol	75.17	91.9
GSMUA_Achr11P...	Banana	cytosol	75.17	91.9
AT2G17360.1	Thale cress	mitochondrion	78.81	91.19
Solyc06g007360.2.1	Tomato	plastid	79.47	90.91
AT5G07090.1	Thale cress	mitochondrion	78.81	90.84
AT5G58420.1	Thale cress	mitochondrion	78.81	90.84
Bra028708.1-P	Field mustard	cytosol	78.15	90.08
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	83.77	89.72
Solyc02g070360.2.1	Tomato	nucleus	78.15	89.39
Solyc02g070350.2.1	Tomato	nucleus, unclear	78.15	89.39
Solyc02g070340.2.1	Tomato	mitochondrion	78.15	89.39
Solyc02g070330.2.1	Tomato	mitochondrion	78.15	89.39
EER90550	Sorghum	cytosol	78.15	89.39
EES00734	Sorghum	cytosol	78.15	89.06
Solyc02g070320.2.1	Tomato	nucleus, unclear	77.81	89.02
PGSC0003DMT400054543	Potato	mitochondrion	77.81	89.02
EES18108	Sorghum	cytosol	77.15	88.59
Os01t0358400-01	Rice	nucleus, plasma membrane	77.48	88.3
Os02t0105900-01	Rice	nucleus	77.15	87.92
Os05t0368300-01	Rice	nucleus	76.16	87.45
HORVU1Hr1G021720.1	Barley	cytosol	76.49	87.17
TraesCS1D01G101600.1	Wheat	cytosol	76.49	87.17
TraesCS1B01G120600.1	Wheat	cytosol	76.49	87.17
TraesCS1A01G092900.1	Wheat	golgi, nucleus	76.49	87.17
VIT_00s0252g00080.t01	Wine grape	nucleus	31.46	87.16
Solyc04g016350.1.1	Tomato	nucleus, unclear	71.85	86.8
Bra005923.1-P	Field mustard	cytosol	77.81	84.23
PGSC0003DMT400052955	Potato	cytosol	50.0	81.18
TraesCS1A01G232700.1	Wheat	cytosol	67.55	80.95
GSMUA_Achr3P23970_001	Banana	cytosol	81.46	80.92
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	81.79	80.19
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	23.84	80.0
GSMUA_Achr2P01640_001	Banana	cytosol	81.13	78.78
Bra020369.1-P	Field mustard	cytosol	78.15	78.41
KXG32490	Sorghum	cytosol	34.77	75.54
Bra005118.1-P	Field mustard	cytosol	22.85	56.56
Bra033109.1-P	Field mustard	cytosol	15.56	40.17
Zm00001d010037_P001	Maize	mitochondrion	14.57	32.84
CDY42359	Canola	cytosol	7.28	17.74
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	4.97	17.65
CDY71580	Canola	cytosol	6.62	16.95
CDY00352	Canola	cytosol	7.28	16.92
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	6.95	12.8
CDY36197	Canola	cytosol	5.3	12.4
Zm00001d010387_P001	Maize	plastid	6.29	10.5
Zm00001d049253_P001	Maize	extracellular	5.63	7.87

Protein Annotations

EntrezGene:100244922	wikigene:100244922	EntrezGene:100263779	wikigene:100263779	MapMan:17.1.3.1.5	Gene3D:2.30.30.30
Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	ProteinID:CCB43450	ProteinID:CCB43450.1	UniProt:F6GUL7
EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722
InterPro:IPR038237	InterPro:KOW	EntrezGene:LOC100244922	wikigene:LOC100244922	EntrezGene:LOC100263779	wikigene:LOC100263779
HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071
PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11
InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf
InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	UniParc:UPI0002108343	ArrayExpress:VIT_06s0004g07150	EnsemblPlantsGene:VIT_06s0004g07150
EnsemblPlants:VIT_06s0004g07150.t01	RefSeq:XP_002275063	RefSeq:XP_002275063.1	SEG:seg	:	:

Description

40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:F6GUL7]

Coordinates

chr6:+:7928545..7931350

Molecular Weight (calculated)

33671.2 Da

IEP (calculated)

10.868

GRAVY (calculated)

-0.331

Length

302 amino acids

Sequence
(BLAST)

001: MGSTRPQCSP GSGYIFIGEL GFIVADAVST QVHSRGVAAA RGLKKHLKRL NAPKHWMLDK LGGAFAPKPS SGPHKSRECL PLILILRNRL KYALTYREVI
101: AILMQRHVLV DGKVRTDKTY PSGFMDVVSI PKTNENFRLL YDTKGRFRLH SIRDEEAKFK LCKVRSVQFG QKGIPYLNTY DGRTIRYPDP LIKANDTIKL
201: DLESNKITDF IKFDVGNVVM VTGGRNRGRV GVIKNREKRK GSFETIHVQD ATGHEFATRL GNVFIIGKGT KPWVTLPKGK GIKLSIIEEA QKRLAAQAAS
301: SA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.