Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 4
- cytosol 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG32490 | Sorghum | cytosol | 54.44 | 35.25 |
| PGSC0003DMT400052955 | Potato | cytosol | 72.22 | 34.95 |
| Bra005118.1-P | Field mustard | cytosol | 46.67 | 34.43 |
| VIT_13s0067g01820.t01 | Wine grape | cytosol | 80.0 | 29.27 |
| GSMUA_Achr11P... | Banana | cytosol | 78.89 | 28.74 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 77.78 | 28.34 |
| KRH76010 | Soybean | endoplasmic reticulum | 81.11 | 27.65 |
| KRH65626 | Soybean | nucleus | 81.11 | 27.65 |
| Solyc06g007360.2.1 | Tomato | plastid | 80.0 | 27.27 |
| EER90550 | Sorghum | cytosol | 77.78 | 26.52 |
| AT2G17360.1 | Thale cress | mitochondrion | 76.67 | 26.44 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 77.78 | 26.42 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 77.78 | 26.42 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 77.78 | 26.42 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 77.78 | 26.42 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 77.78 | 26.42 |
| EES00734 | Sorghum | cytosol | 77.78 | 26.42 |
| AT5G07090.1 | Thale cress | mitochondrion | 76.67 | 26.34 |
| AT5G58420.1 | Thale cress | mitochondrion | 76.67 | 26.34 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 76.67 | 26.14 |
| Solyc02g070360.2.1 | Tomato | nucleus | 76.67 | 26.14 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 76.67 | 26.14 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 76.67 | 26.14 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 76.67 | 26.14 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 76.67 | 26.14 |
| Os02t0105900-01 | Rice | nucleus | 76.67 | 26.04 |
| Bra028708.1-P | Field mustard | cytosol | 75.56 | 25.95 |
| EES18108 | Sorghum | cytosol | 75.56 | 25.86 |
| Bra033109.1-P | Field mustard | cytosol | 33.33 | 25.64 |
| Os05t0368300-01 | Rice | nucleus | 73.33 | 25.1 |
| VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 76.67 | 24.47 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 80.0 | 23.84 |
| Bra005923.1-P | Field mustard | cytosol | 73.33 | 23.66 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 78.89 | 23.36 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 78.89 | 23.05 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 63.33 | 22.62 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 76.67 | 22.19 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 60.0 | 21.6 |
| Bra020369.1-P | Field mustard | cytosol | 72.22 | 21.59 |
| VIT_00s0252g00080.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | MapMan:35.1 | ProteinID:CCB57537 | ProteinID:CCB57537.1 | UniProt:F6HS78 |
| EMBL:FN596242 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022627 | InterPro:IPR014722 | InterPro:IPR038237 | InterPro:KOW | PFAM:PD002667 |
| PFAM:PF00467 | PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | UniParc:UPI0002109158 | ArrayExpress:VIT_00s0252g00100 | EnsemblPlantsGene:VIT_00s0252g00100 | EnsemblPlants:VIT_00s0252g00100.t01 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:17684338..17684610
Molecular Weight (calculated)
10153.4 Da
IEP (calculated)
10.851
GRAVY (calculated)
-0.606
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MKRQSLSSKK VQSVQFGQKG IPYLNTYDRW TIRYPDPLIK ANDTSKLDLE SNKITNFIKF DVGNVVMVIG GRNKGRVGVI KNGEKHKGSI
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.