Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 80.73 | 35.2 |
| EES18108 | Sorghum | cytosol | 84.4 | 34.98 |
| AT2G17360.1 | Thale cress | mitochondrion | 83.49 | 34.87 |
| AT5G07090.1 | Thale cress | mitochondrion | 83.49 | 34.73 |
| AT5G58420.1 | Thale cress | mitochondrion | 83.49 | 34.73 |
| EER90550 | Sorghum | cytosol | 83.49 | 34.47 |
| EES00734 | Sorghum | cytosol | 83.49 | 34.34 |
| Os05t0368300-01 | Rice | nucleus | 82.57 | 34.22 |
| Solyc06g007360.2.1 | Tomato | plastid | 82.57 | 34.09 |
| Bra028708.1-P | Field mustard | cytosol | 81.65 | 33.97 |
| Os02t0105900-01 | Rice | nucleus | 82.57 | 33.96 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 82.57 | 33.96 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 77.98 | 33.73 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 81.65 | 33.71 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 81.65 | 33.71 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 81.65 | 33.71 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 81.65 | 33.71 |
| Solyc02g070360.2.1 | Tomato | nucleus | 81.65 | 33.71 |
| VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 87.16 | 33.69 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 80.73 | 33.33 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 78.9 | 32.45 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 78.9 | 32.45 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 78.9 | 32.45 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 78.9 | 32.45 |
| VIT_13s0067g01820.t01 | Wine grape | cytosol | 72.48 | 32.11 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 87.16 | 31.46 |
| Bra005923.1-P | Field mustard | cytosol | 79.82 | 31.18 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 69.72 | 30.77 |
| GSMUA_Achr11P... | Banana | cytosol | 69.72 | 30.77 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 85.32 | 30.59 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 85.32 | 30.19 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 84.4 | 29.58 |
| Bra020369.1-P | Field mustard | cytosol | 79.82 | 28.9 |
| KXG32490 | Sorghum | cytosol | 30.28 | 23.74 |
| PGSC0003DMT400052955 | Potato | cytosol | 18.35 | 10.75 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 8.26 | 10.59 |
| Bra033109.1-P | Field mustard | cytosol | 7.34 | 6.84 |
| Zm00001d010037_P001 | Maize | mitochondrion | 7.34 | 5.97 |
| Bra005118.1-P | Field mustard | cytosol | 5.5 | 4.92 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 7.34 | 4.88 |
| Zm00001d010387_P001 | Maize | plastid | 7.34 | 4.42 |
| Zm00001d049253_P001 | Maize | extracellular | 5.5 | 2.78 |
| VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:100247049 | Gene3D:3.10.290.40 | MapMan:35.1 | ProteinID:CCB57535 | ProteinID:CCB57535.1 | UniProt:F6HS76 |
| EMBL:FN596242 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0022627 | InterPro:IPR002942 | PFAM:PD002667 | PFAM:PF08071 | PFscan:PS50889 |
| PANTHER:PTHR11581 | PANTHER:PTHR11581:SF11 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_central_region | InterPro:S4_RNA-bd |
| UniParc:UPI0002109156 | ArrayExpress:VIT_00s0252g00080 | EnsemblPlantsGene:VIT_00s0252g00080 | EnsemblPlants:VIT_00s0252g00080.t01 | RefSeq:XP_003635141 | RefSeq:XP_003635141.1 |
| RefSeq:XP_019073776.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:17678505..17679608
Molecular Weight (calculated)
12904.2 Da
IEP (calculated)
11.117
GRAVY (calculated)
-0.407
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKGLKKHLK RLNAPKHWMF DKLGGAFAPK PSYRPQKSWE RLPLILILWN RLKYALTYRE VIAILMQQHV FVDGKVRIDK TYPSGFMDVV SIPKKNKNFR
101: LLYDTKGRF
101: LLYDTKGRF
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.