Factsheet for Os05t0368300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18108	Sorghum	cytosol	95.06	95.06
Os02t0105900-01	Rice	nucleus	91.64	90.94
Os01t0358400-01	Rice	nucleus, plasma membrane	91.64	90.94
GSMUA_Achr11P...	Banana	cytosol	84.79	90.28
GSMUA_Achr5P27000_001	Banana	cytosol	84.41	89.88
KRH69777	Soybean	endoplasmic reticulum	88.97	88.64
KRH08064	Soybean	nucleus	88.97	88.64
KRH73264	Soybean	endoplasmic reticulum	88.59	88.26
KRH14914	Soybean	nucleus	88.59	88.26
KRH76010	Soybean	endoplasmic reticulum	88.21	87.88
KRH65626	Soybean	nucleus	88.21	87.88
TraesCS1A01G232700.1	Wheat	cytosol	84.03	87.7
AT5G07090.1	Thale cress	mitochondrion	86.69	87.02
AT5G58420.1	Thale cress	mitochondrion	86.69	87.02
AT2G17360.1	Thale cress	mitochondrion	86.31	86.97
VIT_13s0067g01820.t01	Wine grape	cytosol	80.61	86.18
Solyc06g007360.2.1	Tomato	plastid	86.31	85.98
Solyc02g070360.2.1	Tomato	nucleus	86.31	85.98
Solyc02g070350.2.1	Tomato	nucleus, unclear	85.93	85.61
Solyc02g070340.2.1	Tomato	mitochondrion	85.93	85.61
Solyc02g070330.2.1	Tomato	mitochondrion	85.93	85.61
PGSC0003DMT400054543	Potato	mitochondrion	85.93	85.61
Solyc02g070320.2.1	Tomato	nucleus, unclear	85.55	85.23
Bra028708.1-P	Field mustard	cytosol	84.79	85.11
Solyc04g016350.1.1	Tomato	nucleus, unclear	79.47	83.6
VIT_00s0252g00080.t01	Wine grape	nucleus	34.22	82.57
CDX70008	Canola	cytosol	84.03	82.16
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	87.07	81.21
CDY02821	Canola	cytosol	84.03	80.36
CDX91445	Canola	cytosol	49.43	80.25
CDX81032	Canola	extracellular	84.41	79.57
GSMUA_Achr3P23970_001	Banana	cytosol	91.25	78.95
CDY58877	Canola	cytosol	83.65	78.85
Bra005923.1-P	Field mustard	cytosol	83.27	78.49
CDY60025	Canola	cytosol	84.79	78.25
GSMUA_Achr2P01640_001	Banana	cytosol	92.02	77.81
CDY32986	Canola	cytosol	85.17	77.78
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	90.49	77.27
CDX99006	Canola	extracellular	84.41	77.08
CDY14056	Canola	cytosol	84.41	76.29
VIT_06s0004g07150.t01	Wine grape	cytosol	87.45	76.16
CDY57385	Canola	cytosol, plastid	85.55	75.5
PGSC0003DMT400052955	Potato	cytosol	52.47	74.19
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	25.1	73.33
CDY32700	Canola	extracellular	83.65	73.09
CDY05015	Canola	cytosol	84.41	72.79
Bra020369.1-P	Field mustard	cytosol	83.27	72.76
CDY69841	Canola	mitochondrion	84.41	71.38
CDX91447	Canola	cytosol, mitochondrion	12.93	69.39
KRH04718	Soybean	cytosol	42.97	58.85
KRH04720	Soybean	cytosol, endoplasmic reticulum	43.73	56.37
CDY52257	Canola	cytosol, mitochondrion	8.37	53.66
Bra005118.1-P	Field mustard	cytosol	24.71	53.28
CDY54450	Canola	cytosol	24.71	53.28
Bra033109.1-P	Field mustard	cytosol	16.73	37.61
CDY68858	Canola	cytosol	16.73	37.61
CDY04355	Canola	cytosol	22.05	29.59
CDY42359	Canola	cytosol	8.37	17.74
CDY71580	Canola	cytosol	7.6	16.95
CDY00352	Canola	cytosol	7.6	15.38
CDY36197	Canola	cytosol	5.32	10.85

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EntrezGene:4338571
ProteinID:BAF17256.1	ProteinID:BAS93660.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	InterPro:IPR002942	InterPro:IPR014722
InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	EnsemblPlantsGene:Os05g0368300	EnsemblPlants:Os05t0368300-01	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	UniProt:Q0DIR7	InterPro:Rib_L2_dom2
InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd
SMART:SM00363	SMART:SM00739	UniParc:UPI0000E1247F	RefSeq:XP_015637379.1	SEG:seg	:

Description

RIBOSOMAL PROTEIN S4Similar to 40S ribosomal protein S4, X isoform (Single copy abundant mRNA protein) (SCR10). (Os05t0368300-01)

Coordinates

chr5:+:17693101..17695783

Molecular Weight (calculated)

29664.5 Da

IEP (calculated)

10.849

GRAVY (calculated)

-0.396

Length

263 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPSHWML DKLGGAFAPK PSSGPHKARE CLPLILILRN RLKYALTYRE VISILMQRHV MVDGKVRTDK TYPAGFMDVV SIAKTGENFR
101: LLYDTKGRFR LHSIKDEDAK FKLCKVRSVQ FGQKGIPFLN TNDGRTIRYP DPLIKANDTI KIDLETNKIV DFIKFDVGNI VMVTGGRNTG RVGVIKSREK
201: HKGSFETIHV EDALGHQFAT RMGNVFTIGK ERKPWVSLPK GKGIKLSIIE EARKRNAEAA AEA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.