CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028708.1-P	Field mustard	cytosol	85.57	99.62
AT5G07090.1	Thale cress	mitochondrion	82.95	96.56
CDX70008	Canola	cytosol	84.92	96.28
CDY14056	Canola	cytosol	90.82	95.19
CDX91445	Canola	cytosol	50.49	95.06
CDX99006	Canola	extracellular	87.87	93.06
CDY58877	Canola	cytosol	84.26	92.11
CDX81032	Canola	extracellular	84.26	92.11
Solyc06g007360.2.1	Tomato	plastid	79.34	91.67
CDY02821	Canola	cytosol	82.3	91.27
CDX91447	Canola	cytosol, mitochondrion	14.43	89.8
CDY60025	Canola	cytosol	83.61	89.47
CDY32986	Canola	cytosol	84.26	89.24
Solyc02g070330.2.1	Tomato	mitochondrion	77.05	89.02
Solyc02g070360.2.1	Tomato	nucleus	77.05	89.02
Solyc02g070350.2.1	Tomato	nucleus, unclear	77.05	89.02
Solyc02g070340.2.1	Tomato	mitochondrion	77.05	89.02
GSMUA_Achr11P...	Banana	cytosol	71.8	88.66
GSMUA_Achr5P27000_001	Banana	cytosol	71.8	88.66
Solyc02g070320.2.1	Tomato	nucleus, unclear	76.72	88.64
PGSC0003DMT400054543	Potato	mitochondrion	76.72	88.64
EER90550	Sorghum	cytosol	76.39	88.26
Solyc04g016350.1.1	Tomato	nucleus, unclear	71.48	87.2
TraesCS1A01G092900.1	Wheat	golgi, nucleus	75.41	86.79
Os01t0358400-01	Rice	nucleus, plasma membrane	75.41	86.79
HORVU1Hr1G021720.1	Barley	cytosol	75.41	86.79
TraesCS1B01G120600.1	Wheat	cytosol	75.41	86.79
TraesCS1D01G101600.1	Wheat	cytosol	75.41	86.79
EES00734	Sorghum	cytosol	75.41	86.79
Os02t0105900-01	Rice	nucleus	75.08	86.42
CDY57385	Canola	cytosol, plastid	84.26	86.24
EES18108	Sorghum	cytosol	73.77	85.55
Os05t0368300-01	Rice	nucleus	72.79	84.41
CDY69841	Canola	mitochondrion	84.92	83.28
CDY32700	Canola	extracellular	81.97	83.06
PGSC0003DMT400052955	Potato	cytosol	49.84	81.72
TraesCS1A01G232700.1	Wheat	cytosol	66.89	80.95
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	80.66	79.87
GSMUA_Achr3P23970_001	Banana	cytosol	79.34	79.61
GSMUA_Achr2P01640_001	Banana	cytosol	77.7	76.21
KXG32490	Sorghum	cytosol	33.11	72.66
CDY54450	Canola	cytosol	25.25	63.11
CDY52257	Canola	cytosol, mitochondrion	7.87	58.54
CDY68858	Canola	cytosol	15.74	41.03
CDY04355	Canola	cytosol	20.66	32.14
CDY42359	Canola	cytosol	7.21	17.74
CDY71580	Canola	cytosol	6.56	16.95
CDY00352	Canola	cytosol	6.89	16.15
CDY36197	Canola	cytosol	5.57	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078ESX8
EnsemblPlants:CDY05015	ProteinID:CDY05015	ProteinID:CDY05015.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00119751001	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479
PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581
PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI0004EF23D5	SEG:seg	:

Description

BnaAnng01970D

Coordinates

chrLK031958:+:1056095..1060521

Molecular Weight (calculated)

35008.9 Da

IEP (calculated)

10.738

GRAVY (calculated)

-0.456

Length

305 amino acids

Sequence
(BLAST)

001: MYIHILLWTR PPNAYVFFFR KTKSKFCSTQ EEVVVVRSET TANMARGLKK HLKRLNAPKH WDLDKLGGAF APKPSSGPHK SRECLPLVLI IRNKLKYALT
101: YREVISILMQ RHIQVDGKVR TDKTYPAGFM DVVSIPKTNE NFRLLYDTKG RFRLHSIRDE EAKFKLCKVR TIQFGQKGIP YLNTYDGRTI RYPDPLIKPN
201: DTIKLDLEEN KIVEFIKFDV GNVVMVTGGR NRGRVGVIKN REKHKGSFET IHIQDSTGHE FATRLGNVFT LGKGTKPWVS LPKGKGIKLT IIEEAWKRLS
301: AQQAA

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.