Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68858 | Canola | cytosol | 92.68 | 32.48 |
| CDY04355 | Canola | cytosol | 92.68 | 19.39 |
| CDX91445 | Canola | cytosol | 58.54 | 14.81 |
| CDY54450 | Canola | cytosol | 36.59 | 12.3 |
| PGSC0003DMT400052955 | Potato | cytosol | 51.22 | 11.29 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 56.1 | 9.31 |
| AT5G07090.1 | Thale cress | mitochondrion | 58.54 | 9.16 |
| Solyc06g007360.2.1 | Tomato | plastid | 58.54 | 9.09 |
| CDX70008 | Canola | cytosol | 58.54 | 8.92 |
| GSMUA_Achr11P... | Banana | cytosol | 53.66 | 8.91 |
| CDY02821 | Canola | cytosol | 58.54 | 8.73 |
| EER90550 | Sorghum | cytosol | 56.1 | 8.71 |
| Os02t0105900-01 | Rice | nucleus | 56.1 | 8.68 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 56.1 | 8.68 |
| EES00734 | Sorghum | cytosol | 56.1 | 8.68 |
| CDX81032 | Canola | extracellular | 58.54 | 8.6 |
| CDY58877 | Canola | cytosol | 58.54 | 8.6 |
| CDY60025 | Canola | cytosol | 58.54 | 8.42 |
| Os05t0368300-01 | Rice | nucleus | 53.66 | 8.37 |
| EES18108 | Sorghum | cytosol | 53.66 | 8.37 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 53.66 | 8.33 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 53.66 | 8.33 |
| CDX99006 | Canola | extracellular | 58.54 | 8.33 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 53.66 | 8.33 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 53.66 | 8.33 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 53.66 | 8.33 |
| Solyc02g070360.2.1 | Tomato | nucleus | 53.66 | 8.33 |
| CDY32986 | Canola | cytosol | 58.54 | 8.33 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 53.66 | 8.3 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 53.66 | 8.3 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 53.66 | 8.3 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 53.66 | 8.3 |
| CDY14056 | Canola | cytosol | 58.54 | 8.25 |
| CDY57385 | Canola | cytosol, plastid | 58.54 | 8.05 |
| CDY32700 | Canola | extracellular | 58.54 | 7.97 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 48.78 | 7.94 |
| CDY05015 | Canola | cytosol | 58.54 | 7.87 |
| CDY69841 | Canola | mitochondrion | 58.54 | 7.72 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 56.1 | 7.57 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 56.1 | 7.47 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 56.1 | 7.4 |
| CDX91447 | Canola | cytosol, mitochondrion | 7.32 | 6.12 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 34.15 | 5.6 |
| CDY42359 | Canola | cytosol | 4.88 | 1.61 |
| CDY36197 | Canola | cytosol | 4.88 | 1.55 |
| KXG32490 | Sorghum | cytosol | 4.88 | 1.44 |
| CDY71580 | Canola | cytosol | 2.44 | 0.85 |
| CDY00352 | Canola | cytosol | 2.44 | 0.77 |
Protein Annotations
| EnsemblPlants:CDY52257 | EnsemblPlantsGene:GSBRNA2T00005237001 | Gene3D:2.30.30.30 | InterPro:IPR014722 | InterPro:Rib_L2_dom2 | ProteinID:CDY52257 |
| ProteinID:CDY52257.1 | SEG:seg | UniParc:UPI0004EE820E | UniProt:A0A078IQP8 | MapMan:35.2 | : |
Description
BnaC08g20290DBnaC08g20290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQP8]
Coordinates
chrLK033071:+:73669..73794
Molecular Weight (calculated)
4626.5 Da
IEP (calculated)
11.597
GRAVY (calculated)
-1.024
Length
41 amino acids
Sequence
(BLAST)
(BLAST)
1: MVTGGRNRGR VGVIRNHAKL KGSFETTTTY KTQQDMSWQQ G
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.