CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58877	Canola	cytosol	98.92	98.92
CDX70008	Canola	cytosol	92.47	95.91
AT5G07090.1	Thale cress	mitochondrion	89.25	95.04
CDX91445	Canola	cytosol	54.84	94.44
CDX91447	Canola	cytosol, mitochondrion	16.13	91.84
Solyc06g007360.2.1	Tomato	plastid	86.02	90.91
CDY02821	Canola	cytosol	89.25	90.55
CDX99006	Canola	extracellular	92.47	89.58
CDY32986	Canola	cytosol	91.76	88.89
CDY14056	Canola	cytosol	92.11	88.32
GSMUA_Achr11P...	Banana	cytosol	78.14	88.26
GSMUA_Achr5P27000_001	Banana	cytosol	78.14	88.26
Solyc02g070360.2.1	Tomato	nucleus	83.51	88.26
Solyc02g070350.2.1	Tomato	nucleus, unclear	83.51	88.26
Solyc02g070340.2.1	Tomato	mitochondrion	83.51	88.26
Solyc02g070330.2.1	Tomato	mitochondrion	83.51	88.26
CDY60025	Canola	cytosol	89.96	88.07
Solyc02g070320.2.1	Tomato	nucleus, unclear	83.15	87.88
PGSC0003DMT400054543	Potato	mitochondrion	83.15	87.88
EER90550	Sorghum	cytosol	82.8	87.5
Solyc04g016350.1.1	Tomato	nucleus, unclear	77.42	86.4
TraesCS1A01G092900.1	Wheat	golgi, nucleus	81.72	86.04
Os01t0358400-01	Rice	nucleus, plasma membrane	81.72	86.04
HORVU1Hr1G021720.1	Barley	cytosol	81.72	86.04
TraesCS1B01G120600.1	Wheat	cytosol	81.72	86.04
TraesCS1D01G101600.1	Wheat	cytosol	81.72	86.04
EES00734	Sorghum	cytosol	81.72	86.04
Os02t0105900-01	Rice	nucleus	81.36	85.66
CDY57385	Canola	cytosol, plastid	91.4	85.57
EES18108	Sorghum	cytosol	80.65	85.55
Os05t0368300-01	Rice	nucleus	79.57	84.41
CDY05015	Canola	cytosol	92.11	84.26
CDY32700	Canola	extracellular	88.17	81.73
PGSC0003DMT400052955	Potato	cytosol	54.48	81.72
CDY69841	Canola	mitochondrion	90.32	81.03
TraesCS1A01G232700.1	Wheat	cytosol	73.12	80.95
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	86.74	78.57
GSMUA_Achr3P23970_001	Banana	cytosol	85.3	78.29
GSMUA_Achr2P01640_001	Banana	cytosol	83.87	75.24
KXG32490	Sorghum	cytosol	35.13	70.5
CDY54450	Canola	cytosol	27.96	63.93
CDY52257	Canola	cytosol, mitochondrion	8.6	58.54
CDY68858	Canola	cytosol	16.85	40.17
CDY04355	Canola	cytosol	22.58	32.14
CDY42359	Canola	cytosol	7.53	16.94
CDY00352	Canola	cytosol	7.53	16.15
CDY71580	Canola	cytosol	6.81	16.1
CDY36197	Canola	cytosol	6.09	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078CWE3
EnsemblPlants:CDX81032	ProteinID:CDX81032	ProteinID:CDX81032.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00134466001	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479
PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581
PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI0004EE65A1	SEG:seg	:

Description

BnaC03g02860D

Coordinates

chrLK031823:+:1390696..1392627

Molecular Weight (calculated)

31777.0 Da

IEP (calculated)

10.812

GRAVY (calculated)

-0.480

Length

279 amino acids

Sequence
(BLAST)

001: MPYNTCSVTF DKLRLMLNAR GLKKHLKRLN APKHWDLDKL GGAFAPKPSS GPHKSRECLP LVLIIRNKLK YALTYREVIS ILMQRHIQVD GKVRTDKTYP
101: AGFMDVVSIP KTNENFRLLY DTKGRFRLHS IRDEEAKFKL CKVRTIQLGQ KGIPFLNTYD GRTIRYPDPL IKPNDTIKLD LEENKVVDFI KFDVGNVVMV
201: TGGRNRGRVG VIKNREKHKG SFETIHIQDS TGHEFATRLG NVFTLGKGTK PWVSLPKGKG IKLTIIEEAR KRLSAQQAA

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.