CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0368300-01	Rice	nucleus	95.06	95.06
EER90550	Sorghum	cytosol	92.02	91.67
EES00734	Sorghum	cytosol	92.02	91.32
GSMUA_Achr11P...	Banana	cytosol	84.79	90.28
KRH73264	Soybean	endoplasmic reticulum	90.49	90.15
GSMUA_Achr5P27000_001	Banana	cytosol	84.41	89.88
KRH08064	Soybean	nucleus	90.11	89.77
KRH69777	Soybean	endoplasmic reticulum	89.73	89.39
KRH14914	Soybean	nucleus	89.73	89.39
KRH76010	Soybean	endoplasmic reticulum	88.59	88.26
KRH65626	Soybean	nucleus	88.59	88.26
Solyc06g007360.2.1	Tomato	plastid	87.83	87.5
Solyc02g070360.2.1	Tomato	nucleus	87.83	87.5
AT5G07090.1	Thale cress	mitochondrion	87.07	87.4
AT5G58420.1	Thale cress	mitochondrion	87.07	87.4
AT2G17360.1	Thale cress	mitochondrion	86.69	87.36
TraesCS1A01G232700.1	Wheat	cytosol	83.65	87.3
Solyc02g070340.2.1	Tomato	mitochondrion	87.45	87.12
Solyc02g070330.2.1	Tomato	mitochondrion	87.45	87.12
PGSC0003DMT400054543	Potato	mitochondrion	87.45	87.12
Solyc02g070350.2.1	Tomato	nucleus, unclear	87.45	87.12
VIT_13s0067g01820.t01	Wine grape	cytosol	81.37	86.99
Solyc02g070320.2.1	Tomato	nucleus, unclear	87.07	86.74
Bra028708.1-P	Field mustard	cytosol	85.93	86.26
Solyc04g016350.1.1	Tomato	nucleus, unclear	80.61	84.8
VIT_00s0252g00080.t01	Wine grape	nucleus	34.98	84.4
CDX70008	Canola	cytosol	85.17	83.27
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	88.21	82.27
CDX91445	Canola	cytosol	50.57	82.1
CDX81032	Canola	extracellular	85.55	80.65
CDY02821	Canola	cytosol	83.65	80.0
CDY58877	Canola	cytosol	84.79	79.93
Bra005923.1-P	Field mustard	cytosol	84.41	79.57
CDY60025	Canola	cytosol	85.93	79.3
GSMUA_Achr3P23970_001	Banana	cytosol	91.64	79.28
CDY32986	Canola	cytosol	86.31	78.82
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	91.64	78.25
CDX99006	Canola	extracellular	85.55	78.12
CDY14056	Canola	cytosol	85.55	77.32
VIT_06s0004g07150.t01	Wine grape	cytosol	88.59	77.15
GSMUA_Achr2P01640_001	Banana	cytosol	90.87	76.85
CDY57385	Canola	cytosol, plastid	86.69	76.51
PGSC0003DMT400052955	Potato	cytosol	53.99	76.34
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	25.86	75.56
KXG32490	Sorghum	cytosol	39.92	75.54
CDY05015	Canola	cytosol	85.55	73.77
CDY32700	Canola	extracellular	82.89	72.43
CDY69841	Canola	mitochondrion	85.55	72.35
Bra020369.1-P	Field mustard	cytosol	82.51	72.09
CDX91447	Canola	cytosol, mitochondrion	12.93	69.39
KRH04718	Soybean	cytosol	44.49	60.94
KRH04720	Soybean	cytosol, endoplasmic reticulum	45.63	58.82
CDY52257	Canola	cytosol, mitochondrion	8.37	53.66
Bra005118.1-P	Field mustard	cytosol	24.71	53.28
CDY54450	Canola	cytosol	24.71	53.28
Bra033109.1-P	Field mustard	cytosol	17.11	38.46
CDY68858	Canola	cytosol	17.11	38.46
CDY04355	Canola	cytosol	22.05	29.59
CDY42359	Canola	cytosol	7.98	16.94
CDY00352	Canola	cytosol	8.37	16.92
CDY71580	Canola	cytosol	7.22	16.1
CDY36197	Canola	cytosol	5.7	11.63

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EntrezGene:8062716
UniProt:C5YX57	EnsemblPlants:EES18108	ProteinID:EES18108	ProteinID:EES18108.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0022627
GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485
PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N
InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	EnsemblPlantsGene:SORBI_3009G115700
unigene:Sbi.3757	UniParc:UPI0001A88D21	RefSeq:XP_002439678.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:45764389..45767193

Molecular Weight (calculated)

29778.7 Da

IEP (calculated)

10.830

GRAVY (calculated)

-0.414

Length

263 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKARE CLPLILILRN RLKYALTYRE VISILMQRLV MVDGKVRTDK TYPSGFMDVV SIPKTGENFR
101: LLYDTKGRFR LHSIRDDEAK FKMCKVRSVQ FGQKGIPFLN TYDGRTIRYP DPLIKANDTI KIDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKSREK
201: HKGSFETIHV EDSLGHQFAT RMGNVFTIGK DKKPWVSLPK GKGIKLSIIE EARKRNAEAA AEA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.