Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 1
- mitochondrion 3
- nucleus 1
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54450 | Canola | cytosol | 100.0 | 100.0 |
| VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 34.43 | 46.67 |
| PGSC0003DMT400052955 | Potato | cytosol | 50.82 | 33.33 |
| Bra028708.1-P | Field mustard | cytosol | 63.93 | 29.77 |
| AT5G07090.1 | Thale cress | mitochondrion | 62.3 | 29.01 |
| VIT_13s0067g01820.t01 | Wine grape | cytosol | 56.56 | 28.05 |
| Bra005923.1-P | Field mustard | cytosol | 63.93 | 27.96 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 56.56 | 27.94 |
| GSMUA_Achr11P... | Banana | cytosol | 56.56 | 27.94 |
| Solyc06g007360.2.1 | Tomato | plastid | 59.02 | 27.27 |
| KRH73264 | Soybean | endoplasmic reticulum | 58.2 | 26.89 |
| KRH69777 | Soybean | endoplasmic reticulum | 58.2 | 26.89 |
| KRH08064 | Soybean | nucleus | 58.2 | 26.89 |
| KRH14914 | Soybean | nucleus | 57.38 | 26.52 |
| KRH76010 | Soybean | endoplasmic reticulum | 56.56 | 26.14 |
| KRH65626 | Soybean | nucleus | 56.56 | 26.14 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 56.56 | 26.04 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 56.56 | 26.04 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 56.56 | 26.04 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 56.56 | 26.04 |
| EER90550 | Sorghum | cytosol | 54.92 | 25.38 |
| EES00734 | Sorghum | cytosol | 54.92 | 25.28 |
| Os01t0358400-01 | Rice | nucleus, plasma membrane | 54.92 | 25.28 |
| Solyc02g070360.2.1 | Tomato | nucleus | 54.1 | 25.0 |
| Solyc02g070350.2.1 | Tomato | nucleus, unclear | 54.1 | 25.0 |
| Solyc02g070340.2.1 | Tomato | mitochondrion | 54.1 | 25.0 |
| Solyc02g070330.2.1 | Tomato | mitochondrion | 54.1 | 25.0 |
| Solyc02g070320.2.1 | Tomato | nucleus, unclear | 54.1 | 25.0 |
| Bra020369.1-P | Field mustard | cytosol | 61.48 | 24.92 |
| Os02t0105900-01 | Rice | nucleus | 54.1 | 24.91 |
| Bra033109.1-P | Field mustard | cytosol | 23.77 | 24.79 |
| Os05t0368300-01 | Rice | nucleus | 53.28 | 24.71 |
| EES18108 | Sorghum | cytosol | 53.28 | 24.71 |
| PGSC0003DMT400054543 | Potato | mitochondrion | 53.28 | 24.62 |
| TraesCS1A01G232700.1 | Wheat | cytosol | 50.82 | 24.6 |
| KRH04720 | Soybean | cytosol, endoplasmic reticulum | 40.98 | 24.51 |
| VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 55.74 | 24.11 |
| KXG32490 | Sorghum | cytosol | 27.05 | 23.74 |
| Solyc04g016350.1.1 | Tomato | nucleus, unclear | 48.36 | 23.6 |
| VIT_06s0004g07150.t01 | Wine grape | cytosol | 56.56 | 22.85 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 57.38 | 22.73 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 56.56 | 22.7 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 55.74 | 21.86 |
| KRH04718 | Soybean | cytosol | 27.87 | 17.71 |
| Zm00001d010037_P001 | Maize | mitochondrion | 18.03 | 16.42 |
| VIT_00s0252g00080.t01 | Wine grape | nucleus | 4.92 | 5.5 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 3.28 | 4.71 |
| Zm00001d010387_P001 | Maize | plastid | 6.56 | 4.42 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 5.74 | 4.27 |
| Zm00001d050009_P001 | Maize | plastid | 3.28 | 4.08 |
| Zm00001d049253_P001 | Maize | extracellular | 6.56 | 3.7 |
Protein Annotations
| Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | MapMan:35.2 | EnsemblPlantsGene:Bra005118 | EnsemblPlants:Bra005118.1 | EnsemblPlants:Bra005118.1-P |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 | InterPro:IPR038237 | UniProt:M4CLN1 | PFAM:PD002667 |
| PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_central_region |
| InterPro:Ribosomal_S4e_central_sf | UniParc:UPI00025477A9 | SEG:seg | : | : | : |
Description
AT5G07090 (E=1e-012) | 40S ribosomal protein S4 (RPS4B)
Coordinates
chrA05:-:3516242..3516764
Molecular Weight (calculated)
13698.6 Da
IEP (calculated)
10.712
GRAVY (calculated)
-0.480
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPRDASVFT PSGTRKQMFG SLVFQAVQSE NHPVLSEGNP LPEHIRWSHP IRYPDPLIKP NDTIKLDLEE NKVVEFIKSD VGKVVMVTGG RNRGRVGVIK
101: NRINKLTIIE EARKRLSAQQ AA
101: NRINKLTIIE EARKRLSAQQ AA
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.