Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr5P27000_001 | Banana | cytosol | 98.79 | 98.79 |
VIT_13s0067g01820.t01 | Wine grape | cytosol | 91.9 | 92.28 |
Zm00001d034790_P001 | Maize | peroxisome | 89.07 | 89.07 |
KRH08064 | Soybean | nucleus | 94.33 | 88.26 |
KRH65626 | Soybean | nucleus | 93.93 | 87.88 |
KRH69777 | Soybean | endoplasmic reticulum | 93.93 | 87.88 |
KRH73264 | Soybean | endoplasmic reticulum | 93.93 | 87.88 |
KRH76010 | Soybean | endoplasmic reticulum | 93.93 | 87.88 |
KRH14914 | Soybean | nucleus | 93.12 | 87.12 |
EES00734 | Sorghum | cytosol | 91.5 | 85.28 |
HORVU1Hr1G021720.1 | Barley | cytosol | 91.5 | 85.28 |
TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 91.5 | 85.28 |
TraesCS1B01G120600.1 | Wheat | cytosol | 91.5 | 85.28 |
TraesCS1D01G101600.1 | Wheat | cytosol | 91.5 | 85.28 |
Zm00001d012878_P001 | Maize | plasma membrane | 91.09 | 84.91 |
EER90550 | Sorghum | cytosol | 90.69 | 84.85 |
Solyc06g007360.2.1 | Tomato | plastid | 90.69 | 84.85 |
EES18108 | Sorghum | cytosol | 90.28 | 84.79 |
Os05t0368300-01 | Rice | nucleus | 90.28 | 84.79 |
Os01t0358400-01 | Rice | nucleus, plasma membrane | 90.69 | 84.53 |
Zm00001d045775_P001 | Maize | cytosol | 32.79 | 84.38 |
AT2G17360.1 | Thale cress | mitochondrion | 89.07 | 84.29 |
Os02t0105900-01 | Rice | nucleus | 90.28 | 84.15 |
AT5G07090.1 | Thale cress | mitochondrion | 89.07 | 83.97 |
AT5G58420.1 | Thale cress | mitochondrion | 89.07 | 83.97 |
Bra028708.1-P | Field mustard | cytosol | 89.07 | 83.97 |
Solyc02g070360.2.1 | Tomato | nucleus | 89.07 | 83.33 |
Zm00001d015481_P001 | Maize | cytosol | 34.01 | 83.17 |
Solyc02g070330.2.1 | Tomato | mitochondrion | 88.66 | 82.95 |
Solyc02g070340.2.1 | Tomato | mitochondrion | 88.66 | 82.95 |
Solyc02g070350.2.1 | Tomato | nucleus, unclear | 88.66 | 82.95 |
PGSC0003DMT400054543 | Potato | mitochondrion | 88.26 | 82.58 |
Solyc02g070320.2.1 | Tomato | nucleus, unclear | 88.26 | 82.58 |
PGSC0003DMT400052955 | Potato | cytosol | 61.54 | 81.72 |
CDX70008 | Canola | cytosol | 88.66 | 81.41 |
Solyc04g016350.1.1 | Tomato | nucleus, unclear | 80.97 | 80.0 |
VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 90.69 | 79.43 |
GSMUA_Achr3P23970_001 | Banana | cytosol | 97.57 | 79.28 |
CDY02821 | Canola | cytosol | 88.26 | 79.27 |
VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 28.74 | 78.89 |
CDY58877 | Canola | cytosol | 89.07 | 78.85 |
Bra005923.1-P | Field mustard | cytosol | 88.66 | 78.49 |
GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 97.57 | 78.25 |
CDX81032 | Canola | extracellular | 88.26 | 78.14 |
Zm00001d019693_P001 | Maize | cytosol, plastid | 57.09 | 77.9 |
CDX91445 | Canola | cytosol | 51.01 | 77.78 |
TraesCS1A01G232700.1 | Wheat | cytosol | 79.35 | 77.78 |
CDX91447 | Canola | cytosol, mitochondrion | 15.38 | 77.55 |
GSMUA_Achr2P01640_001 | Banana | cytosol | 97.57 | 77.49 |
KXG32490 | Sorghum | cytosol | 43.32 | 76.98 |
CDY60025 | Canola | cytosol | 87.85 | 76.14 |
CDX99006 | Canola | extracellular | 88.66 | 76.04 |
CDY32986 | Canola | cytosol | 88.26 | 75.69 |
CDY14056 | Canola | cytosol | 89.07 | 75.6 |
VIT_06s0004g07150.t01 | Wine grape | cytosol | 91.9 | 75.17 |
CDY57385 | Canola | cytosol, plastid | 88.66 | 73.49 |
Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 34.41 | 73.28 |
Zm00001d035215_P001 | Maize | cytosol | 23.89 | 72.84 |
CDY32700 | Canola | extracellular | 88.26 | 72.43 |
Bra020369.1-P | Field mustard | cytosol | 87.85 | 72.09 |
Zm00001d037427_P001 | Maize | extracellular | 39.27 | 71.85 |
CDY05015 | Canola | cytosol | 88.66 | 71.8 |
Zm00001d004105_P001 | Maize | extracellular, plastid | 54.66 | 69.95 |
Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 38.46 | 69.85 |
VIT_00s0252g00080.t01 | Wine grape | nucleus | 30.77 | 69.72 |
CDY69841 | Canola | mitochondrion | 87.45 | 69.45 |
Zm00001d006068_P001 | Maize | cytosol | 34.82 | 67.72 |
Zm00001d005247_P001 | Maize | mitochondrion | 38.06 | 65.73 |
KRH04718 | Soybean | cytosol | 50.61 | 65.1 |
Zm00001d031575_P001 | Maize | extracellular | 37.65 | 64.14 |
Zm00001d033604_P001 | Maize | mitochondrion | 34.41 | 63.91 |
KRH04720 | Soybean | cytosol, endoplasmic reticulum | 51.82 | 62.75 |
Zm00001d033737_P001 | Maize | cytosol | 22.27 | 62.5 |
Zm00001d030402_P001 | Maize | cytosol, plastid | 46.15 | 58.76 |
Zm00001d000121_P001 | Maize | cytosol | 25.91 | 58.72 |
Zm00001d031460_P001 | Maize | cytosol | 30.77 | 57.14 |
Zm00001d009518_P001 | Maize | cytosol | 39.68 | 56.65 |
Bra005118.1-P | Field mustard | cytosol | 27.94 | 56.56 |
CDY54450 | Canola | cytosol | 27.94 | 56.56 |
Zm00001d035647_P001 | Maize | cytosol | 33.2 | 56.55 |
Zm00001d030502_P001 | Maize | cytosol | 31.17 | 55.0 |
CDY52257 | Canola | cytosol, mitochondrion | 8.91 | 53.66 |
Zm00001d004880_P001 | Maize | cytosol | 23.08 | 53.27 |
Zm00001d053283_P002 | Maize | cytosol | 38.06 | 51.37 |
Zm00001d015857_P002 | Maize | cytosol | 25.91 | 50.79 |
Zm00001d052602_P001 | Maize | extracellular | 25.91 | 48.85 |
Zm00001d037876_P001 | Maize | cytosol | 53.44 | 48.71 |
Zm00001d009343_P001 | Maize | mitochondrion | 37.65 | 48.44 |
Zm00001d024029_P001 | Maize | cytosol | 22.27 | 48.25 |
Zm00001d051261_P001 | Maize | cytosol | 38.87 | 46.6 |
Zm00001d036575_P001 | Maize | mitochondrion | 37.65 | 45.15 |
Zm00001d019999_P001 | Maize | cytosol | 55.06 | 44.16 |
Zm00001d005030_P009 | Maize | cytosol | 21.46 | 43.44 |
Zm00001d015887_P001 | Maize | cytosol | 25.91 | 42.67 |
Zm00001d019486_P001 | Maize | cytosol | 34.41 | 41.46 |
Zm00001d008887_P002 | Maize | cytosol | 40.49 | 37.59 |
Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 21.86 | 37.24 |
Bra033109.1-P | Field mustard | cytosol | 17.41 | 36.75 |
CDY68858 | Canola | cytosol | 17.41 | 36.75 |
Zm00001d015817_P002 | Maize | plastid | 39.68 | 35.64 |
Zm00001d016333_P001 | Maize | cytosol | 38.06 | 33.57 |
Zm00001d031743_P001 | Maize | cytosol | 27.13 | 33.33 |
Zm00001d045627_P001 | Maize | cytosol, plastid | 23.48 | 32.22 |
Zm00001d050845_P002 | Maize | cytosol | 24.7 | 30.96 |
Zm00001d009287_P001 | Maize | cytosol | 16.6 | 30.37 |
CDY04355 | Canola | cytosol | 23.08 | 29.08 |
Zm00001d045958_P001 | Maize | cytosol | 41.3 | 27.49 |
Zm00001d045876_P002 | Maize | plasma membrane | 23.48 | 26.98 |
Zm00001d021480_P001 | Maize | plasma membrane | 25.1 | 24.12 |
Zm00001d045942_P001 | Maize | cytosol | 37.25 | 23.35 |
Zm00001d019803_P001 | Maize | cytosol | 22.67 | 23.24 |
Zm00001d046153_P001 | Maize | plastid | 28.74 | 22.47 |
Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 24.29 | 20.69 |
Zm00001d042154_P021 | Maize | plastid | 38.06 | 19.83 |
Zm00001d013036_P001 | Maize | plastid | 23.89 | 19.03 |
Zm00001d035807_P001 | Maize | cytosol | 25.91 | 17.93 |
CDY42359 | Canola | cytosol | 8.5 | 16.94 |
Zm00001d001770_P002 | Maize | plastid | 25.91 | 16.24 |
Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 21.46 | 16.16 |
CDY00352 | Canola | cytosol | 8.5 | 16.15 |
CDY71580 | Canola | cytosol | 7.69 | 16.1 |
Zm00001d004587_P001 | Maize | plastid | 14.98 | 14.98 |
Zm00001d036129_P001 | Maize | vacuole | 22.27 | 13.61 |
CDY36197 | Canola | cytosol | 6.07 | 11.63 |
Zm00001d019111_P002 | Maize | mitochondrion | 11.74 | 9.9 |
Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 25.91 | 8.14 |
Protein Annotations
MapMan:17.1.3.1.5 | Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | InterPro:40S_S4_C | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0030529 |
EnsemblPlantsGene:GSMUA_Achr11G25490_001 | EnsemblPlants:GSMUA_Achr11P25490_001 | EnsemblPlants:GSMUA_Achr11T25490_001 | InterPro:IPR002942 | InterPro:IPR014722 | InterPro:IPR038237 |
InterPro:KOW | UniProt:M0RVC9 | HAMAP:MF_00485 | PFAM:PD002667 | PFAM:PF00467 | PFAM:PF00900 |
PFAM:PF01479 | PFAM:PF08071 | PFAM:PF16121 | PIRSF:PIRSF002116 | PFscan:PS50889 | PANTHER:PTHR11581 |
PANTHER:PTHR11581:SF11 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf |
InterPro:S4_RNA-bd | SMART:SM00363 | SMART:SM00739 | UniParc:UPI000295046B | SEG:seg | : |
Description
40S ribosomal protein S4 [Source:GMGC_GENE;Acc:GSMUA_Achr11G25490_001]
Coordinates
chr11:+:24598131..24600607
Molecular Weight (calculated)
27601.9 Da
IEP (calculated)
10.680
GRAVY (calculated)
-0.323
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDKLGGAFA PKPSSGPHKA RECLPLILIL RNKLKYALTY REVIAILMQR HVMVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSVRDEE
101: AKFKLCKVRS VQFGQKGIPY LNTYDGRTIR YPDPLIKAND TIKLDLETNK IVDFIKFDVG NVVMVTGGRN TGRVGVIKNR EKHKGSFDTI HVQDATGHEF
201: ATRMGNVFTI GKGTKPWVSL PKGKGIKLSI IEEARKRLAA AGATATA
101: AKFKLCKVRS VQFGQKGIPY LNTYDGRTIR YPDPLIKAND TIKLDLETNK IVDFIKFDVG NVVMVTGGRN TGRVGVIKNR EKHKGSFDTI HVQDATGHEF
201: ATRMGNVFTI GKGTKPWVSL PKGKGIKLSI IEEARKRLAA AGATATA
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.