Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, mitochondrion, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 2
- extracellular 2
- vacuole 1
- plasma membrane 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033737_P001 | Maize | cytosol | 17.93 | 59.09 |
| Zm00001d013036_P001 | Maize | plastid | 62.76 | 58.71 |
| Zm00001d005030_P009 | Maize | cytosol | 23.1 | 54.92 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 26.9 | 53.79 |
| Zm00001d052602_P001 | Maize | extracellular | 23.79 | 52.67 |
| Zm00001d015481_P001 | Maize | cytosol | 16.9 | 48.51 |
| Zm00001d009287_P001 | Maize | cytosol | 20.69 | 44.44 |
| Zm00001d035215_P001 | Maize | cytosol | 12.07 | 43.21 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 17.24 | 43.1 |
| Zm00001d006068_P001 | Maize | cytosol | 18.28 | 41.73 |
| Zm00001d037427_P001 | Maize | extracellular | 18.97 | 40.74 |
| Zm00001d050845_P002 | Maize | cytosol | 27.59 | 40.61 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 18.97 | 40.44 |
| Zm00001d005247_P001 | Maize | mitochondrion | 17.24 | 34.97 |
| Zm00001d031575_P001 | Maize | extracellular | 17.24 | 34.48 |
| Zm00001d035647_P001 | Maize | cytosol | 17.24 | 34.48 |
| Zm00001d033604_P001 | Maize | mitochondrion | 15.52 | 33.83 |
| Zm00001d009518_P001 | Maize | cytosol | 18.28 | 30.64 |
| Zm00001d053283_P002 | Maize | cytosol | 18.62 | 29.51 |
| Zm00001d030502_P001 | Maize | cytosol | 14.14 | 29.29 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 17.93 | 28.73 |
| Zm00001d009343_P001 | Maize | mitochondrion | 18.97 | 28.65 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 18.97 | 28.5 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 74.83 | 27.61 |
| Zm00001d051261_P001 | Maize | cytosol | 18.28 | 25.73 |
| Zm00001d050009_P001 | Maize | plastid | 8.62 | 25.51 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 23.1 | 25.28 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 23.1 | 25.28 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 23.1 | 25.28 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 23.1 | 25.28 |
| Zm00001d036575_P001 | Maize | mitochondrion | 17.93 | 25.24 |
| EER90550 | Sorghum | cytosol | 22.76 | 25.0 |
| Os02t0105900-01 | Rice | nucleus | 22.76 | 24.91 |
| Zm00001d012878_P001 | Maize | plasma membrane | 22.76 | 24.91 |
| Zm00001d019486_P001 | Maize | cytosol | 17.59 | 24.88 |
| Zm00001d034790_P001 | Maize | peroxisome | 21.03 | 24.7 |
| GSMUA_Achr11P... | Banana | cytosol | 20.69 | 24.29 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 20.34 | 23.89 |
| Zm00001d035807_P001 | Maize | cytosol | 29.31 | 23.81 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 23.1 | 22.04 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 23.1 | 21.75 |
| Zm00001d037876_P001 | Maize | cytosol | 19.66 | 21.03 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 22.41 | 20.9 |
| Zm00001d016333_P001 | Maize | cytosol | 20.0 | 20.71 |
| Zm00001d008887_P002 | Maize | cytosol | 18.28 | 19.92 |
| Zm00001d015817_P002 | Maize | plastid | 18.28 | 19.27 |
| Zm00001d004880_P001 | Maize | cytosol | 6.9 | 18.69 |
| Zm00001d000121_P001 | Maize | cytosol | 6.55 | 17.43 |
| Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 19.31 | 17.07 |
| Zm00001d019999_P001 | Maize | cytosol | 17.93 | 16.88 |
| Zm00001d015857_P002 | Maize | cytosol | 7.24 | 16.67 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 10.69 | 15.98 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 8.97 | 15.85 |
| Zm00001d049253_P001 | Maize | extracellular | 11.72 | 15.74 |
| Zm00001d045958_P001 | Maize | cytosol | 20.0 | 15.63 |
| Zm00001d010387_P001 | Maize | plastid | 9.66 | 15.47 |
| Zm00001d015887_P001 | Maize | cytosol | 7.93 | 15.33 |
| Zm00001d036129_P001 | Maize | vacuole | 19.66 | 14.11 |
| Zm00001d045942_P001 | Maize | cytosol | 16.55 | 12.18 |
| Zm00001d019111_P002 | Maize | mitochondrion | 12.07 | 11.95 |
| Zm00001d042154_P021 | Maize | plastid | 19.31 | 11.81 |
| Zm00001d046153_P001 | Maize | plastid | 10.34 | 9.49 |
| Zm00001d031460_P001 | Maize | cytosol | 3.45 | 7.52 |
| Zm00001d045775_P001 | Maize | cytosol | 2.41 | 7.29 |
| Zm00001d001770_P002 | Maize | plastid | 9.31 | 6.85 |
| Zm00001d010037_P001 | Maize | mitochondrion | 2.76 | 5.97 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 1.72 | 5.88 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 3.45 | 5.56 |
| Zm00001d024029_P001 | Maize | cytosol | 2.07 | 5.26 |
| Zm00001d045876_P002 | Maize | plasma membrane | 3.79 | 5.12 |
| Zm00001d021480_P001 | Maize | plasma membrane | 3.79 | 4.28 |
| Zm00001d004587_P001 | Maize | plastid | 3.1 | 3.64 |
| Zm00001d019803_P001 | Maize | cytosol | 2.76 | 3.32 |
| Zm00001d031743_P001 | Maize | cytosol | 2.07 | 2.99 |
Protein Annotations
| Gene3D:2.40.50.740 | MapMan:35.1 | UniProt:A0A1D6EII6 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR038237 |
| ProteinID:ONM19918.1 | PFAM:PD002667 | PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Ribosomal_S4e |
| InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | UniParc:UPI000843B10C | EnsemblPlantsGene:Zm00001d004990 | EnsemblPlants:Zm00001d004990_P001 | EnsemblPlants:Zm00001d004990_T001 |
| SEG:seg | : | : | : | : | : |
Description
40S ribosomal protein S4-3
Coordinates
chr2:-:152384204..152388668
Molecular Weight (calculated)
32356.6 Da
IEP (calculated)
8.220
GRAVY (calculated)
0.051
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLLLHQPLL LLNASADHHL PWRRSSPISS CQGAVAELAL PQPWMSLGHP SPISPRPHPL AAAPSYSWWL SLLPWMLVVL PSLVLTSAPC VGWPVAPALG
101: LSSANSAPSI PARILLIGPA QIILMPGRGT TATAMKPHCV APSTCSTEYR STCRPDLQPW LRGRQTPLPS TLCLTLHQCD EMSERIDDMR PEFDSARLFD
201: VYFTHCDLVD DVFFKLYKVR SVLFGQKGIP YLNTYDGRTM RYPDPLIKAN DTIKIDLETN KIMDFIKLYL PFHGLHQVIY LVRLNVSTNS
101: LSSANSAPSI PARILLIGPA QIILMPGRGT TATAMKPHCV APSTCSTEYR STCRPDLQPW LRGRQTPLPS TLCLTLHQCD EMSERIDDMR PEFDSARLFD
201: VYFTHCDLVD DVFFKLYKVR SVLFGQKGIP YLNTYDGRTM RYPDPLIKAN DTIKIDLETN KIMDFIKLYL PFHGLHQVIY LVRLNVSTNS
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.