Factsheet for Zm00001d005608_P001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, mitochondrion, plastid, plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 2
extracellular 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	27.61	74.83
Zm00001d033737_P001	Maize	cytosol	6.62	59.09
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	9.92	53.79
Zm00001d015481_P001	Maize	cytosol	6.62	51.49
Zm00001d013036_P001	Maize	plastid	18.07	45.81
Zm00001d052602_P001	Maize	extracellular	7.51	45.04
Zm00001d035215_P001	Maize	cytosol	4.58	44.44
Zm00001d005432_P003	Maize	cytosol, mitochondrion	7.63	44.12
Zm00001d006068_P001	Maize	cytosol	7.12	44.09
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	6.49	43.97
Zm00001d037427_P001	Maize	extracellular	7.51	43.7
Zm00001d005030_P009	Maize	cytosol	6.62	42.62
Zm00001d031575_P001	Maize	extracellular	6.87	37.24
Zm00001d035647_P001	Maize	cytosol	6.74	36.55
Zm00001d005247_P001	Maize	mitochondrion	6.62	36.36
Zm00001d033604_P001	Maize	mitochondrion	5.85	34.59
Zm00001d053283_P002	Maize	cytosol	8.02	34.43
Zm00001d009518_P001	Maize	cytosol	7.51	34.1
Zm00001d030502_P001	Maize	cytosol	5.85	32.86
Zm00001d009287_P001	Maize	cytosol	5.6	32.59
Zm00001d019693_P001	Maize	cytosol, plastid	7.12	30.94
Zm00001d051261_P001	Maize	cytosol	8.02	30.58
Zm00001d009343_P001	Maize	mitochondrion	7.38	30.21
Zm00001d004105_P001	Maize	extracellular, plastid	7.38	30.05
Zm00001d050845_P002	Maize	cytosol	7.38	29.44
Zm00001d036575_P001	Maize	mitochondrion	7.51	28.64
EER90550	Sorghum	cytosol	9.03	26.89
Zm00001d019486_P001	Maize	cytosol	7.0	26.83
HORVU1Hr1G021720.1	Barley	cytosol	9.03	26.79
Zm00001d012878_P001	Maize	plasma membrane	9.03	26.79
Os02t0105900-01	Rice	nucleus	9.03	26.79
TraesCS1A01G092900.1	Wheat	golgi, nucleus	9.03	26.79
TraesCS1B01G120600.1	Wheat	cytosol	9.03	26.79
TraesCS1D01G101600.1	Wheat	cytosol	9.03	26.79
Zm00001d034790_P001	Maize	peroxisome	8.27	26.32
GSMUA_Achr11P...	Banana	cytosol	8.14	25.91
Zm00001d050009_P001	Maize	plastid	3.18	25.51
GSMUA_Achr5P27000_001	Banana	cytosol	8.02	25.51
GSMUA_Achr3P23970_001	Banana	cytosol	8.91	23.03
Zm00001d000121_P001	Maize	cytosol	3.18	22.94
Zm00001d037876_P001	Maize	cytosol	7.89	22.88
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	8.91	22.73
Zm00001d016333_P001	Maize	cytosol	8.02	22.5
GSMUA_Achr2P01640_001	Banana	cytosol	8.78	22.19
Zm00001d015817_P002	Maize	plastid	7.76	22.18
Zm00001d008887_P002	Maize	cytosol	7.51	22.18
Zm00001d004880_P001	Maize	cytosol	2.93	21.5
Zm00001d015857_P002	Maize	cytosol	3.18	19.84
Zm00001d045958_P001	Maize	cytosol	8.65	18.33
Zm00001d019999_P001	Maize	cytosol	7.12	18.18
Zm00001d030402_P001	Maize	cytosol, plastid	4.45	18.04
Zm00001d015887_P001	Maize	cytosol	3.44	18.0
Zm00001d035807_P001	Maize	cytosol	8.14	17.93
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	7.0	16.77
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	3.31	15.85
Zm00001d010387_P001	Maize	plastid	3.44	14.92
Zm00001d042154_P021	Maize	plastid	8.4	13.92
Zm00001d049253_P001	Maize	extracellular	3.82	13.89
Zm00001d045942_P001	Maize	cytosol	6.87	13.71
Zm00001d036129_P001	Maize	vacuole	6.87	13.37
Zm00001d031460_P001	Maize	cytosol	2.04	12.03
Zm00001d045775_P001	Maize	cytosol	1.4	11.46
Zm00001d024029_P001	Maize	cytosol	1.65	11.4
Zm00001d010037_P001	Maize	mitochondrion	1.91	11.19
Zm00001d046153_P001	Maize	plastid	4.2	10.44
Zm00001d019111_P002	Maize	mitochondrion	3.69	9.9
Zm00001d045627_P001	Maize	cytosol, plastid	2.16	9.44
Zm00001d045876_P002	Maize	plasma membrane	2.29	8.37
Zm00001d001770_P002	Maize	plastid	4.07	8.12
Zm00001d021480_P001	Maize	plasma membrane	2.29	7.0
Zm00001d031743_P001	Maize	cytosol	1.65	6.47
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	0.64	5.88
Zm00001d019803_P001	Maize	cytosol	1.78	5.81
Zm00001d004587_P001	Maize	plastid	1.4	4.45

Protein Annotations

Gene3D:1.10.1540.10	Gene3D:2.40.50.740	Gene3D:3.40.640.10	MapMan:4.2.5.1	UniProt:A0A1D6EP40	InterPro:ArAA_b-elim_lyase/Thr_aldolase
InterPro:BEACH_dom	InterPro:BEACH_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016829	InterPro:IPR000409	InterPro:IPR015421	InterPro:IPR036372	InterPro:IPR038237
ProteinID:ONM21549.1	PFAM:PD002667	PFAM:PF00900	PFAM:PF01212	PFAM:PF02138	PFscan:PS50197
PANTHER:PTHR13743	PANTHER:PTHR13743:SF109	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_major	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf
SMART:SM01026	SUPFAM:SSF53383	SUPFAM:SSF81837	UniParc:UPI0008430C4B	EnsemblPlantsGene:Zm00001d005608	EnsemblPlants:Zm00001d005608_P001
EnsemblPlants:Zm00001d005608_T001	SEG:seg	:	:	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr2:+:180562750..180580465

Molecular Weight (calculated)

86926.3 Da

IEP (calculated)

7.841

GRAVY (calculated)

0.026

Length

786 amino acids

Sequence
(BLAST)

001: MPLLLHQPLL LLNASADHHL PWRRSSPISS CQGAVAELAL PQPWMSLGHP SPISPRPHPL AAAPSYSWWL SLLPWMLVVL PSLVLTSAPC VGWPVAPALG
101: LSSANSAPSI PARILLIGPA QIILMPGRGT TATAMKPHCV APSTCSTEYR STCRPDLQPW LRGRQTPLPS TLCLTLHQCD EMSERIDDMR PEFDSARLFD
201: VYFTHCDLVD DVFVCASTHC LKLHIDGARI FHASAALGVL VDRLVKAADS VLVCLSKGLG APVGSVIVGS KASIDKARIL RKTLGGGMRH VGVLCAAAHV
301: AVRDTVGKLA DDHKKAKALA VWVLKLLCLV GFIFLEGLKK IEQITVDSAS VETNMFKLYK VRSVLFGQKG IPYLNTYDGR TMRYPDPLIK ANDTIKIDLE
401: TNKIMDFIKL YLPFHGLHQV IYLVRLNVST NSSASDPSGH AVLRPTLSFV GVRYPLLSGP AASNPSPEVA FMPLRSEIPA NAAPAQTPAP EPVGRLMDSV
501: HKVFYAVVEA AAVRADNSHL GGLVRYPVST TLPHIGSRLF LTWGVFWSFP ECFFDCRRRG RCSSRRKQPS WRYLIPILYV SVELVKALQA HIINWDIHMF
601: DEEIGNTTQA GHQSMEPKDH HTIHPEFPTK AFKAHKVYYL NEGGKFDHAD RLFQSIESAY INRLSNTSDV KELIPEFFYM PEFLENSNSY HLGVKQDGEL
701: IGDVALPPWA KDSSVAFLMT VNLALQLCLA LQRTTSAYSY VAQLHNLKDN NSSDEFDKDS IESGDRSLEE LSWETLELLV VPHIFR

Best Arabidopsis Sequence Match ( AT3G04520.1 )
(BLAST)

001: MVTPTTIRTV DLRSDTVTKP TESMRSAMAN AEVDDDVLGN DPTALRLEKE VAEIAGKEAA MFVPSGTMGN LISVLVHCDE RGSEVILGDD SHIHIYENGG
101: VSSLGGVHPR TVKNEEDGTM EIGAIEAAVR SPKGDLHHPV TKLICLENTQ ANCGGRCLPI EYIDKVGELA KKHGLKLHID GARIFNASVA LGVPVKRIVQ
201: AADSVSICLS KGIGAPVGSV IVGSKKFITK ARWLRKTLGG GMRQIGVLCA AALVALHENV AKLEDDHKKA RVLAEGLNRI ERLRVNVAAV ETNIIYVDIP
301: EDPKFGAEEA CKSLEDVGVL VIPQATFRIR IVLHHQISDV DVEYVLSCFE KIFHS

Arabidopsis Description

THA2Probable low-specificity L-threonine aldolase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPH3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.