Factsheet for Zm00001d042154_P021

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015481_P001	Maize	cytosol	16.46	77.23
Zm00001d016333_P001	Maize	cytosol	42.19	71.43
Zm00001d031575_P001	Maize	extracellular	21.73	71.03
Zm00001d006068_P001	Maize	cytosol	17.72	66.14
Zm00001d053283_P002	Maize	cytosol	25.53	66.12
Zm00001d030502_P001	Maize	cytosol	19.2	65.0
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	15.82	64.66
Zm00001d035215_P001	Maize	cytosol	10.97	64.2
Zm00001d045958_P001	Maize	cytosol	49.79	63.61
Zm00001d037427_P001	Maize	extracellular	17.93	62.96
Zm00001d005432_P003	Maize	cytosol, mitochondrion	17.93	62.5
Zm00001d033737_P001	Maize	cytosol	11.18	60.23
Zm00001d051261_P001	Maize	cytosol	24.68	56.8
Zm00001d005247_P001	Maize	mitochondrion	16.88	55.94
Zm00001d033604_P001	Maize	mitochondrion	15.19	54.14
Zm00001d009518_P001	Maize	cytosol	18.99	52.02
Zm00001d035647_P001	Maize	cytosol	15.61	51.03
Zm00001d004880_P001	Maize	cytosol	10.97	48.6
Zm00001d019693_P001	Maize	cytosol, plastid	18.14	47.51
Zm00001d009343_P001	Maize	mitochondrion	18.78	46.35
Zm00001d015857_P002	Maize	cytosol	12.24	46.03
Zm00001d004105_P001	Maize	extracellular, plastid	18.35	45.08
Zm00001d000121_P001	Maize	cytosol	10.34	44.95
Zm00001d036575_P001	Maize	mitochondrion	19.2	44.17
Zm00001d005030_P009	Maize	cytosol	10.55	40.98
Zm00001d045775_P001	Maize	cytosol	8.02	39.58
Zm00001d024029_P001	Maize	cytosol	9.28	38.6
Zm00001d052602_P001	Maize	extracellular	10.55	38.17
GSMUA_Achr11P...	Banana	cytosol	19.83	38.06
GSMUA_Achr5P27000_001	Banana	cytosol	19.62	37.65
Zm00001d034790_P001	Maize	peroxisome	19.62	37.65
Zm00001d008887_P002	Maize	cytosol	21.1	37.59
EER90550	Sorghum	cytosol	20.46	36.74
Os02t0105900-01	Rice	nucleus	20.46	36.6
Zm00001d012878_P001	Maize	plasma membrane	20.46	36.6
Zm00001d019486_P001	Maize	cytosol	15.82	36.59
TraesCS1D01G101600.1	Wheat	cytosol	20.25	36.23
HORVU1Hr1G021720.1	Barley	cytosol	20.25	36.23
TraesCS1A01G092900.1	Wheat	golgi, nucleus	20.25	36.23
TraesCS1B01G120600.1	Wheat	cytosol	20.25	36.23
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	10.97	35.86
Zm00001d015887_P001	Maize	cytosol	11.18	35.33
Zm00001d015817_P002	Maize	plastid	19.83	34.18
Zm00001d037876_P001	Maize	cytosol	19.41	33.95
Zm00001d030402_P001	Maize	cytosol, plastid	13.5	32.99
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	21.1	32.47
GSMUA_Achr3P23970_001	Banana	cytosol	20.68	32.24
GSMUA_Achr2P01640_001	Banana	cytosol	21.1	32.15
Zm00001d031460_P001	Maize	cytosol	8.65	30.83
Zm00001d010037_P001	Maize	mitochondrion	8.65	30.6
Zm00001d019999_P001	Maize	cytosol	19.41	29.87
Zm00001d050009_P001	Maize	plastid	5.91	28.57
Zm00001d009287_P001	Maize	cytosol	7.59	26.67
Zm00001d031743_P001	Maize	cytosol	10.97	25.87
Zm00001d045627_P001	Maize	cytosol, plastid	9.7	25.56
Zm00001d050845_P002	Maize	cytosol	10.55	25.38
Zm00001d045942_P001	Maize	cytosol	20.04	24.11
Zm00001d045876_P002	Maize	plasma membrane	10.55	23.26
Zm00001d019803_P001	Maize	cytosol	10.55	20.75
Zm00001d046153_P001	Maize	plastid	13.71	20.57
Zm00001d021480_P001	Maize	plasma membrane	10.76	19.84
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	11.81	19.31
Zm00001d013036_P001	Maize	plastid	11.6	17.74
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	11.39	16.46
Zm00001d035807_P001	Maize	cytosol	11.18	14.85
Zm00001d001770_P002	Maize	plastid	11.81	14.21
Zm00001d036129_P001	Maize	vacuole	11.81	13.86
Zm00001d019111_P002	Maize	mitochondrion	6.54	10.58
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	13.92	8.4
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	1.27	7.06
Zm00001d004587_P001	Maize	plastid	2.95	5.67
Zm00001d010387_P001	Maize	plastid	2.11	5.52
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	1.9	5.49
Zm00001d049253_P001	Maize	extracellular	2.11	4.63

Protein Annotations

MapMan:12.3.3.9.1	MapMan:15.5.29	Gene3D:2.160.10.10	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:2.60.120.650
MapMan:3.1.2.6	UniProt:A0A1D6N1U5	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0070569	InterPro:IPR014722	InterPro:IPR038237	ProteinID:ONM34685.1	PFAM:PD002667	PFAM:PF00900
PFAM:PF01704	PANTHER:PTHR43511	PANTHER:PTHR43511:SF1	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf
SUPFAM:SSF51161	InterPro:Trimer_LpxA-like_sf	InterPro:UDPGP_fam	UniParc:UPI000844C996	EnsemblPlantsGene:Zm00001d042154	EnsemblPlants:Zm00001d042154_P021
EnsemblPlants:Zm00001d042154_T021	SEG:seg	:	:	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr3:+:153985765..153990675

Molecular Weight (calculated)

52978.1 Da

IEP (calculated)

9.493

GRAVY (calculated)

-0.227

Length

474 amino acids

Sequence
(BLAST)

001: MSSSPSSMNR RPPGPLALGL ESLAKKKTHS KKLTVKPHPD PVVALQWSNM ERLVSSFGSS SRNLCQMDTG NLCPTGLHNT WDRSRFLPVK ATSDLQLVQS
101: DLYTLVDGFV TRNSARTNPS NPSIELGPEF KKVGSFLGRF KSIPSIVELD ILKVSGDVWF GSGIVLKGKV TITAKPGVKL EIPDGAVIGN KVHMLMHATE
201: VHYQCPKRVR VQSDVSERIA NGTSVHVNTH VQNLNLDIEE QSHKHSISHI EEPNTNNSEG SLASAAVWDV FRRQDLPKLN EYLAVHREEC AARCQAVSSV
301: KYPIYDQTVY LNDYHKKMLK DQYGSIANWL ACQLNITSVC GLRVLKLVCL VGFIFLEGLK TIEQITMDSA SVETNMFKLC KVRFVQFGQK GIPYLNTYDG
401: RAIRYLDPLI KANDTIKIDL QTNKIMDFIK FDVDNMVMVT GGRNTRRVGV IKNREKHKGS FETIHVLLGA FCYV

Best Arabidopsis Sequence Match ( AT3G03250.2 )
(BLAST)

001: MAATTENLPQ LKSAVDGLTE MSESEKSGFI SLVSRYLSGE AQHIEWSKIQ TPTDEIVVPY EKMTPVSQDV AETKNLLDKL VVLKLNGGLG TTMGCTGPKS
101: VIEVRDGLTF LDLIVIQIEN LNNKYGCKVP LVLMNSFNTH DDTHKIVEKY TNSNVDIHTF NQSKYPRVVA DEFVPWPSKG KTDKEGWYPP GHGDVFPALM
201: NSGKLDTFLS QGKEYVFVAN SDNLGAIVDL TILKHLIQNK NEYCMEVTPK TLADVKGGTL ISYEGKVQLL EIAQVPDEHV NEFKSIEKFK IFNTNNLWVN
301: LKAIKKLVEA DALKMEIIPN PKEVDGVKVL QLETAAGAAI RFFDNAIGVN VPRSRFLPVK ASSDLLLVQS DLYTLVDGFV TRNKARTNPS NPSIELGPEF
401: KKVATFLSRF KSIPSIVELD SLKVSGDVWF GSSIVLKGKV TVAAKSGVKL EIPDRAVVEN KAVMILVQDF QSNHQNEN

Arabidopsis Description

UGPUDP-GLUCOSE PYROPHOSPHORYLASE 1 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT02]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.