Factsheet for Zm00001d009287_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033737_P001	Maize	cytosol	28.89	44.32
Zm00001d005030_P009	Maize	cytosol	36.3	40.16
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	41.48	38.62
Zm00001d035215_P001	Maize	cytosol	22.96	38.27
Zm00001d052602_P001	Maize	extracellular	37.04	38.17
Zm00001d015481_P001	Maize	cytosol	28.15	37.62
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	26.67	31.03
Zm00001d006068_P001	Maize	cytosol	28.89	30.71
Zm00001d050845_P002	Maize	cytosol	42.22	28.93
Zm00001d037427_P001	Maize	extracellular	28.15	28.15
Zm00001d005432_P003	Maize	cytosol, mitochondrion	28.15	27.94
Zm00001d033604_P001	Maize	mitochondrion	26.67	27.07
Zm00001d030502_P001	Maize	cytosol	26.67	25.71
Zm00001d031575_P001	Maize	extracellular	27.41	25.52
Zm00001d035647_P001	Maize	cytosol	27.41	25.52
Zm00001d005247_P001	Maize	mitochondrion	25.93	24.48
Zm00001d009518_P001	Maize	cytosol	28.15	21.97
Zm00001d019693_P001	Maize	cytosol, plastid	28.89	21.55
Zm00001d009343_P001	Maize	mitochondrion	29.63	20.83
Zm00001d053283_P002	Maize	cytosol	28.15	20.77
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	44.44	20.69
Zm00001d019486_P001	Maize	cytosol	28.89	19.02
Zm00001d004880_P001	Maize	cytosol	14.81	18.69
Zm00001d036575_P001	Maize	mitochondrion	28.15	18.45
Zm00001d013036_P001	Maize	plastid	42.22	18.39
Zm00001d004105_P001	Maize	extracellular, plastid	25.93	18.13
Zm00001d051261_P001	Maize	cytosol	26.67	17.48
Zm00001d034790_P001	Maize	peroxisome	31.85	17.41
GSMUA_Achr11P...	Banana	cytosol	30.37	16.6
Zm00001d000121_P001	Maize	cytosol	13.33	16.51
GSMUA_Achr5P27000_001	Banana	cytosol	29.63	16.19
EER90550	Sorghum	cytosol	31.11	15.91
Zm00001d012878_P001	Maize	plasma membrane	31.11	15.85
Zm00001d035807_P001	Maize	cytosol	41.48	15.69
Os02t0105900-01	Rice	nucleus	30.37	15.47
Zm00001d008887_P002	Maize	cytosol	30.37	15.41
HORVU1Hr1G021720.1	Barley	cytosol	29.63	15.09
TraesCS1A01G092900.1	Wheat	golgi, nucleus	29.63	15.09
TraesCS1B01G120600.1	Wheat	cytosol	29.63	15.09
TraesCS1D01G101600.1	Wheat	cytosol	29.63	15.09
Zm00001d015887_P001	Maize	cytosol	16.3	14.67
Zm00001d037876_P001	Maize	cytosol	28.15	14.02
Zm00001d016333_P001	Maize	cytosol	28.89	13.93
Zm00001d015857_P002	Maize	cytosol	12.59	13.49
GSMUA_Achr3P23970_001	Banana	cytosol	30.37	13.49
Zm00001d015817_P002	Maize	plastid	27.41	13.45
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	30.37	13.31
GSMUA_Achr2P01640_001	Banana	cytosol	29.63	12.86
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	29.63	12.2
Zm00001d019999_P001	Maize	cytosol	27.41	12.01
Zm00001d030402_P001	Maize	cytosol, plastid	14.81	10.31
Zm00001d045958_P001	Maize	cytosol	28.15	10.24
Zm00001d045942_P001	Maize	cytosol	29.63	10.15
Zm00001d036129_P001	Maize	vacuole	29.63	9.9
Zm00001d046153_P001	Maize	plastid	19.26	8.23
Zm00001d050009_P001	Maize	plastid	5.93	8.16
Zm00001d042154_P021	Maize	plastid	26.67	7.59
Zm00001d045775_P001	Maize	cytosol	4.44	6.25
Zm00001d001770_P002	Maize	plastid	17.04	5.84
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	32.59	5.6
Zm00001d049253_P001	Maize	extracellular	8.89	5.56
Zm00001d019111_P002	Maize	mitochondrion	11.85	5.46
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	5.93	4.88
Zm00001d031460_P001	Maize	cytosol	4.44	4.51
Zm00001d010387_P001	Maize	plastid	5.93	4.42
Zm00001d024029_P001	Maize	cytosol	2.96	3.51
Zm00001d031743_P001	Maize	cytosol	3.7	2.49
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	1.48	2.35
Zm00001d010037_P001	Maize	mitochondrion	2.22	2.24
Zm00001d045627_P001	Maize	cytosol, plastid	2.22	1.67
Zm00001d019803_P001	Maize	cytosol	2.96	1.66
Zm00001d004587_P001	Maize	plastid	2.96	1.62
Zm00001d021480_P001	Maize	plasma membrane	2.96	1.56
Zm00001d045876_P002	Maize	plasma membrane	2.22	1.4

Protein Annotations

Gene3D:2.40.50.740	MapMan:35.2	ProteinID:AQK91614.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038237
UniProt:K7VS66	PFAM:PD002667	PFAM:PF00900	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	UniParc:UPI000220A8AD	EnsemblPlantsGene:Zm00001d009287	EnsemblPlants:Zm00001d009287_P001	EnsemblPlants:Zm00001d009287_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr8:-:52300412..52302386

Molecular Weight (calculated)

15357.4 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.141

Length

135 amino acids

Sequence
(BLAST)

001: MEMFFGSFLS ESVSPQNLFG HPDVERYPFL NQYHRIDVRT EPALPFNPLA ARAATISLSA FGPFGFGFFN GKGKSSSSTY DGRTIRYPDP LIKANDTIKI
101: DLETNKIMDF IKLYLPFYGL HQVIYLVRFN ISTNS

Best Arabidopsis Sequence Match ( AT2G17360.2 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGKC VHNR

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.