Factsheet for Zm00001d012878_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90550	Sorghum	cytosol	99.25	99.62
Os02t0105900-01	Rice	nucleus	96.98	96.98
Zm00001d034790_P001	Maize	peroxisome	89.81	96.36
HORVU1Hr1G021720.1	Barley	cytosol	93.21	93.21
TraesCS1A01G092900.1	Wheat	golgi, nucleus	93.21	93.21
TraesCS1B01G120600.1	Wheat	cytosol	93.21	93.21
TraesCS1D01G101600.1	Wheat	cytosol	93.21	93.21
Zm00001d045775_P001	Maize	cytosol	33.58	92.71
GSMUA_Achr11P...	Banana	cytosol	84.91	91.09
GSMUA_Achr5P27000_001	Banana	cytosol	84.53	90.69
Zm00001d015481_P001	Maize	cytosol	32.45	85.15
Zm00001d005432_P003	Maize	cytosol, mitochondrion	43.4	84.56
Zm00001d019693_P001	Maize	cytosol, plastid	56.6	82.87
GSMUA_Achr3P23970_001	Banana	cytosol	91.32	79.61
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	91.7	78.9
GSMUA_Achr2P01640_001	Banana	cytosol	90.94	77.49
Zm00001d004105_P001	Maize	extracellular, plastid	55.85	76.68
Zm00001d035215_P001	Maize	cytosol	22.64	74.07
Zm00001d037427_P001	Maize	extracellular	37.36	73.33
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	32.08	73.28
Zm00001d030402_P001	Maize	cytosol, plastid	52.08	71.13
Zm00001d006068_P001	Maize	cytosol	33.21	69.29
Zm00001d005247_P001	Maize	mitochondrion	37.36	69.23
Zm00001d050009_P001	Maize	plastid	25.28	68.37
Zm00001d033604_P001	Maize	mitochondrion	33.96	67.67
Zm00001d031575_P001	Maize	extracellular	35.47	64.83
Zm00001d033737_P001	Maize	cytosol	21.51	64.77
Zm00001d031460_P001	Maize	cytosol	31.7	63.16
Zm00001d000121_P001	Maize	cytosol	25.28	61.47
Zm00001d035647_P001	Maize	cytosol	32.45	59.31
Zm00001d037876_P001	Maize	cytosol	59.25	57.93
Zm00001d030502_P001	Maize	cytosol	30.57	57.86
Zm00001d009518_P001	Maize	cytosol	37.74	57.8
Zm00001d004880_P001	Maize	cytosol	22.64	56.07
Zm00001d015857_P002	Maize	cytosol	26.42	55.56
Zm00001d053283_P002	Maize	cytosol	37.36	54.1
Zm00001d024029_P001	Maize	cytosol	22.64	52.63
Zm00001d019999_P001	Maize	cytosol	61.13	52.6
Zm00001d009343_P001	Maize	mitochondrion	35.85	49.48
Zm00001d052602_P001	Maize	extracellular	24.15	48.85
Zm00001d051261_P001	Maize	cytosol	37.36	48.06
Zm00001d036575_P001	Maize	mitochondrion	36.98	47.57
Zm00001d005030_P009	Maize	cytosol	21.13	45.9
Zm00001d015887_P001	Maize	cytosol	25.28	44.67
Zm00001d019486_P001	Maize	cytosol	33.21	42.93
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	21.51	39.31
Zm00001d008887_P002	Maize	cytosol	39.25	39.1
Zm00001d015817_P002	Maize	plastid	38.49	37.09
Zm00001d031743_P001	Maize	cytosol	27.55	36.32
Zm00001d045627_P001	Maize	cytosol, plastid	24.53	36.11
Zm00001d016333_P001	Maize	cytosol	37.36	35.36
Zm00001d010037_P001	Maize	mitochondrion	17.36	34.33
Zm00001d050845_P002	Maize	cytosol	23.77	31.98
Zm00001d009287_P001	Maize	cytosol	15.85	31.11
Zm00001d045876_P002	Maize	plasma membrane	24.15	29.77
Zm00001d045958_P001	Maize	cytosol	39.62	28.3
Zm00001d021480_P001	Maize	plasma membrane	26.04	26.85
Zm00001d019803_P001	Maize	cytosol	23.77	26.14
Zm00001d045942_P001	Maize	cytosol	36.98	24.87
Zm00001d046153_P001	Maize	plastid	28.68	24.05
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	24.91	22.76
Zm00001d013036_P001	Maize	plastid	24.91	21.29
Zm00001d042154_P021	Maize	plastid	36.6	20.46
Zm00001d035807_P001	Maize	cytosol	25.66	19.05
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.04	18.82
Zm00001d001770_P002	Maize	plastid	25.66	17.26
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	20.0	16.16
Zm00001d004587_P001	Maize	plastid	13.58	14.57
Zm00001d036129_P001	Maize	vacuole	21.89	14.36
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.92	12.8
Zm00001d019111_P002	Maize	mitochondrion	11.7	10.58
Zm00001d010387_P001	Maize	plastid	6.79	9.94
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	26.79	9.03
Zm00001d049253_P001	Maize	extracellular	4.91	6.02

Protein Annotations

EntrezGene:101027121	MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C
EMBL:AF013487	ProteinID:AQK61723.1	UniProt:B4FMI5	EMBL:BT038323	ncoils:Coil	EMBL:EU958804
EMBL:EU962537	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW
HAMAP:MF_00485	UniProt:O22424	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479
PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581
PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	UniParc:UPI0000135004	EnsemblPlantsGene:Zm00001d012878
EnsemblPlants:Zm00001d012878_P001	EnsemblPlants:Zm00001d012878_T001	SEG:seg	:	:	:

Description

ribosomal protein S4 ribosomal protein S4

Coordinates

chr5:+:1531936..1534668

Molecular Weight (calculated)

30018.8 Da

IEP (calculated)

10.822

GRAVY (calculated)

-0.468

Length

265 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILIIRN RLKYALTYRE VISILMQRHV LVDGKVRTDK TYPAGFMDVI SIPKTNENYR
101: LLYDTKGRFR LHPIRDEDAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KIDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKNREK
201: HKGSFETIHV EDSLGHQFAT RMGNVFTIGK GNKPWVSLPK GKGIKLSIIE EQRKRDAAAQ AAANA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.