Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015481_P001 | Maize | cytosol | 44.81 | 81.19 |
| Zm00001d031575_P001 | Maize | extracellular | 59.02 | 74.48 |
| Zm00001d006068_P001 | Maize | cytosol | 47.54 | 68.5 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 43.17 | 68.1 |
| Zm00001d035215_P001 | Maize | cytosol | 30.05 | 67.9 |
| Zm00001d033737_P001 | Maize | cytosol | 31.15 | 64.77 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 48.09 | 64.71 |
| Zm00001d037427_P001 | Maize | extracellular | 46.99 | 63.7 |
| Zm00001d030502_P001 | Maize | cytosol | 48.09 | 62.86 |
| Zm00001d005247_P001 | Maize | mitochondrion | 44.81 | 57.34 |
| Zm00001d033604_P001 | Maize | mitochondrion | 41.53 | 57.14 |
| Zm00001d051261_P001 | Maize | cytosol | 61.75 | 54.85 |
| Zm00001d009518_P001 | Maize | cytosol | 51.37 | 54.34 |
| Zm00001d035647_P001 | Maize | cytosol | 42.62 | 53.79 |
| Zm00001d004880_P001 | Maize | cytosol | 28.42 | 48.6 |
| Zm00001d015857_P002 | Maize | cytosol | 32.79 | 47.62 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 45.9 | 46.41 |
| Zm00001d009343_P001 | Maize | mitochondrion | 48.63 | 46.35 |
| Zm00001d000121_P001 | Maize | cytosol | 27.32 | 45.87 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 47.54 | 45.08 |
| Zm00001d036575_P001 | Maize | mitochondrion | 49.18 | 43.69 |
| Zm00001d024029_P001 | Maize | cytosol | 26.23 | 42.11 |
| Zm00001d005030_P009 | Maize | cytosol | 27.87 | 41.8 |
| Zm00001d045775_P001 | Maize | cytosol | 21.31 | 40.62 |
| Zm00001d052602_P001 | Maize | extracellular | 28.96 | 40.46 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 30.6 | 38.62 |
| Zm00001d034790_P001 | Maize | peroxisome | 51.37 | 38.06 |
| GSMUA_Achr11P... | Banana | cytosol | 51.37 | 38.06 |
| Zm00001d019486_P001 | Maize | cytosol | 42.62 | 38.05 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 50.82 | 37.65 |
| EER90550 | Sorghum | cytosol | 54.1 | 37.5 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 54.1 | 37.36 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 54.1 | 37.36 |
| Os02t0105900-01 | Rice | nucleus | 54.1 | 37.36 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 54.1 | 37.36 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 54.1 | 37.36 |
| Zm00001d012878_P001 | Maize | plasma membrane | 54.1 | 37.36 |
| Zm00001d015887_P001 | Maize | cytosol | 30.6 | 37.33 |
| Zm00001d008887_P002 | Maize | cytosol | 52.46 | 36.09 |
| Zm00001d015817_P002 | Maize | plastid | 51.91 | 34.55 |
| Zm00001d016333_P001 | Maize | cytosol | 52.46 | 34.29 |
| Zm00001d037876_P001 | Maize | cytosol | 49.18 | 33.21 |
| Zm00001d031460_P001 | Maize | cytosol | 24.04 | 33.08 |
| Zm00001d045958_P001 | Maize | cytosol | 65.57 | 32.34 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 53.55 | 32.24 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 53.55 | 31.82 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 53.01 | 31.19 |
| Zm00001d010037_P001 | Maize | mitochondrion | 22.4 | 30.6 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 32.24 | 30.41 |
| Zm00001d009287_P001 | Maize | cytosol | 20.77 | 28.15 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 26.23 | 26.67 |
| Zm00001d019999_P001 | Maize | cytosol | 44.26 | 26.3 |
| Zm00001d042154_P021 | Maize | plastid | 66.12 | 25.53 |
| Zm00001d050845_P002 | Maize | cytosol | 27.32 | 25.38 |
| Zm00001d031743_P001 | Maize | cytosol | 26.78 | 24.38 |
| Zm00001d050009_P001 | Maize | plastid | 12.57 | 23.47 |
| Zm00001d045876_P002 | Maize | plasma membrane | 25.14 | 21.4 |
| Zm00001d045942_P001 | Maize | cytosol | 45.9 | 21.32 |
| Zm00001d046153_P001 | Maize | plastid | 36.61 | 21.2 |
| Zm00001d021480_P001 | Maize | plasma membrane | 26.23 | 18.68 |
| Zm00001d019803_P001 | Maize | cytosol | 24.59 | 18.67 |
| Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 29.51 | 18.62 |
| Zm00001d013036_P001 | Maize | plastid | 29.51 | 17.42 |
| Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 29.51 | 16.46 |
| Zm00001d035807_P001 | Maize | cytosol | 28.96 | 14.85 |
| Zm00001d001770_P002 | Maize | plastid | 30.05 | 13.96 |
| Zm00001d036129_P001 | Maize | vacuole | 28.42 | 12.87 |
| Zm00001d019111_P002 | Maize | mitochondrion | 15.3 | 9.56 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 34.43 | 8.02 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 3.28 | 7.06 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 5.46 | 6.1 |
| Zm00001d010387_P001 | Maize | plastid | 6.01 | 6.08 |
| Zm00001d004587_P001 | Maize | plastid | 8.2 | 6.07 |
| Zm00001d049253_P001 | Maize | extracellular | 3.83 | 3.24 |
Protein Annotations
| EntrezGene:103654685 | Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.30.420.40 | MapMan:35.1 | UniProt:A0A1D6QNL2 |
| ProteinID:AQK59167.1 | ProteinID:AQK59174.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR014722 | InterPro:IPR038237 | InterPro:KOW | PFAM:PD002667 | PFAM:PF00467 |
| PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_central_region |
| InterPro:Ribosomal_S4e_central_sf | SMART:SM00739 | UniParc:UPI0004DE8D3E | EnsemblPlantsGene:Zm00001d053283 | EnsemblPlants:Zm00001d053283_P002 | EnsemblPlants:Zm00001d053283_T002 |
| SEG:seg | : | : | : | : | : |
Description
Putative ribosomal protein S4 (RPS4A) family protein isoform 1%3B Putative ribosomal protein S4 (RPS4A) family protein isoform 2%3B Putative ribosomal protein S4 (RPS4A) family protein isoform 3
Coordinates
chr4:+:223933580..223937015
Molecular Weight (calculated)
20627.1 Da
IEP (calculated)
9.086
GRAVY (calculated)
-0.187
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPLQAAVA AAHALSLLWR KPLMEVNHCV ARTSRCQAVA SVKYPIYDQT VYLNDYHKKM LKDQYEGLKT IEQITMDSAS VETNMFKLCK VMSVQFGQKG
101: IPYLNTYDGR TIRYPDPLIK ANDTIKIDLE TNKIMDFINF DVGNVVMVTG GRNTGRVGAI KNREKHKGSF ETIHVLLGAF CYV
101: IPYLNTYDGR TIRYPDPLIK ANDTIKIDLE TNKIMDFINF DVGNVVMVTG GRNTGRVGAI KNREKHKGSF ETIHVLLGAF CYV
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
Arabidopsis Description
RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.