Factsheet for Zm00001d004105_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 3
cytosol 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	cytosol, plastid, secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015481_P001	Maize	cytosol	45.6	87.13
Zm00001d019693_P001	Maize	cytosol, plastid	78.76	83.98
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	44.56	74.14
Zm00001d005247_P001	Maize	mitochondrion	53.89	72.73
Zm00001d037427_P001	Maize	extracellular	49.74	71.11
Zm00001d033604_P001	Maize	mitochondrion	48.19	69.92
Zm00001d035215_P001	Maize	cytosol	27.98	66.67
Zm00001d006068_P001	Maize	cytosol	43.01	65.35
Zm00001d050009_P001	Maize	plastid	32.12	63.27
Zm00001d005432_P003	Maize	cytosol, mitochondrion	44.56	63.24
Zm00001d031575_P001	Maize	extracellular	44.56	59.31
Zm00001d030402_P001	Maize	cytosol, plastid	59.59	59.28
Zm00001d033737_P001	Maize	cytosol	26.42	57.95
Zm00001d034790_P001	Maize	peroxisome	74.09	57.89
EER90550	Sorghum	cytosol	76.68	56.06
Zm00001d012878_P001	Maize	plasma membrane	76.68	55.85
GSMUA_Achr11P...	Banana	cytosol	69.95	54.66
Zm00001d024029_P001	Maize	cytosol	32.12	54.39
GSMUA_Achr5P27000_001	Banana	cytosol	69.43	54.25
Os02t0105900-01	Rice	nucleus	74.09	53.96
Zm00001d037876_P001	Maize	cytosol	75.65	53.87
Zm00001d035647_P001	Maize	cytosol	40.41	53.79
Zm00001d009518_P001	Maize	cytosol	47.15	52.6
HORVU1Hr1G021720.1	Barley	cytosol	72.02	52.45
TraesCS1A01G092900.1	Wheat	golgi, nucleus	72.02	52.45
TraesCS1B01G120600.1	Wheat	cytosol	72.02	52.45
TraesCS1D01G101600.1	Wheat	cytosol	72.02	52.45
Zm00001d015857_P002	Maize	cytosol	33.68	51.59
Zm00001d004880_P001	Maize	cytosol	28.5	51.4
Zm00001d030502_P001	Maize	cytosol	36.79	50.71
Zm00001d019999_P001	Maize	cytosol	78.76	49.35
Zm00001d053283_P002	Maize	cytosol	45.08	47.54
Zm00001d009343_P001	Maize	mitochondrion	46.63	46.88
Zm00001d000121_P001	Maize	cytosol	25.91	45.87
GSMUA_Achr3P23970_001	Banana	cytosol	72.02	45.72
Zm00001d051261_P001	Maize	cytosol	48.7	45.63
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	71.5	44.81
GSMUA_Achr2P01640_001	Banana	cytosol	70.98	44.05
Zm00001d036575_P001	Maize	mitochondrion	46.63	43.69
Zm00001d052602_P001	Maize	extracellular	29.53	43.51
Zm00001d045775_P001	Maize	cytosol	21.24	42.71
Zm00001d005030_P009	Maize	cytosol	26.94	42.62
Zm00001d015887_P001	Maize	cytosol	31.61	40.67
Zm00001d019486_P001	Maize	cytosol	39.38	37.07
Zm00001d045627_P001	Maize	cytosol, plastid	33.16	35.56
Zm00001d008887_P002	Maize	cytosol	47.15	34.21
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	25.39	33.79
Zm00001d031460_P001	Maize	cytosol	22.28	32.33
Zm00001d016333_P001	Maize	cytosol	46.63	32.14
Zm00001d015817_P002	Maize	plastid	45.6	32.0
Zm00001d010037_P001	Maize	mitochondrion	21.24	30.6
Zm00001d045876_P002	Maize	plasma membrane	33.68	30.23
Zm00001d031743_P001	Maize	cytosol	30.57	29.35
Zm00001d050845_P002	Maize	cytosol	28.5	27.92
Zm00001d021480_P001	Maize	plasma membrane	36.27	27.24
Zm00001d019803_P001	Maize	cytosol	33.16	26.56
Zm00001d009287_P001	Maize	cytosol	18.13	25.93
Zm00001d045958_P001	Maize	cytosol	48.7	25.34
Zm00001d046153_P001	Maize	plastid	36.27	22.15
Zm00001d045942_P001	Maize	cytosol	43.52	21.32
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	28.5	18.97
Zm00001d042154_P021	Maize	plastid	45.08	18.35
Zm00001d013036_P001	Maize	plastid	28.5	17.74
Zm00001d035807_P001	Maize	cytosol	30.05	16.25
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	25.91	15.24
Zm00001d001770_P002	Maize	plastid	30.57	14.97
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	5.7	12.94
Zm00001d036129_P001	Maize	vacuole	26.94	12.87
Zm00001d004587_P001	Maize	plastid	11.92	9.31
Zm00001d019111_P002	Maize	mitochondrion	13.99	9.22
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	30.05	7.38
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	5.18	6.1
Zm00001d049253_P001	Maize	extracellular	6.74	6.02
Zm00001d010387_P001	Maize	plastid	5.18	5.52

Protein Annotations

Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.10	MapMan:35.1	UniProt:A0A1D6EDG4	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR036986
InterPro:IPR038237	InterPro:KOW	ProteinID:ONM18329.1	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf
InterPro:S4_RNA-bd_sf	SMART:SM00739	UniParc:UPI00022077A9	EnsemblPlantsGene:Zm00001d004105	EnsemblPlants:Zm00001d004105_P001	EnsemblPlants:Zm00001d004105_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr2:+:83174192..83175831

Molecular Weight (calculated)

22149.4 Da

IEP (calculated)

9.985

GRAVY (calculated)

-0.030

Length

193 amino acids

Sequence
(BLAST)

001: MHPSIGCSTS LAELFWSFFL WAPKPSSGPH KSRECLPLIL IIRNRLKYAL TYLEVISILM QHYVLVDGKM SFPSLRQMRT TGFFRLHPIR DEDAKFKLCK
101: VRSIQFGQKG IPYLNTYNDC TIRYPDLLIK ANDTIKIELE TNKIMDFIKF DVGNVVMVTG GRNTGRVGVI KNKEKHKGSF ETIHVLLGAF CYV

Best Arabidopsis Sequence Match ( AT5G07090.2 )
(BLAST)

001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.