Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015481_P001 | Maize | cytosol | 18.02 | 70.3 |
| Zm00001d035215_P001 | Maize | cytosol | 13.45 | 65.43 |
| Zm00001d030502_P001 | Maize | cytosol | 21.83 | 61.43 |
| Zm00001d006068_P001 | Maize | cytosol | 19.29 | 59.84 |
| Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 20.56 | 59.56 |
| Zm00001d050071_P001 | Maize | endoplasmic reticulum, extracellular | 17.51 | 59.48 |
| Zm00001d037427_P001 | Maize | extracellular | 19.8 | 57.78 |
| Zm00001d031575_P001 | Maize | extracellular | 21.07 | 57.24 |
| Zm00001d033604_P001 | Maize | mitochondrion | 18.27 | 54.14 |
| Zm00001d033737_P001 | Maize | cytosol | 11.68 | 52.27 |
| Zm00001d005247_P001 | Maize | mitochondrion | 18.78 | 51.75 |
| Zm00001d004880_P001 | Maize | cytosol | 13.96 | 51.4 |
| Zm00001d009518_P001 | Maize | cytosol | 22.34 | 50.87 |
| Zm00001d053283_P002 | Maize | cytosol | 21.32 | 45.9 |
| Zm00001d019693_P001 | Maize | cytosol, plastid | 20.56 | 44.75 |
| Zm00001d015857_P002 | Maize | cytosol | 14.21 | 44.44 |
| Zm00001d035647_P001 | Maize | cytosol | 16.24 | 44.14 |
| Zm00001d000121_P001 | Maize | cytosol | 12.18 | 44.04 |
| Zm00001d004105_P001 | Maize | extracellular, plastid | 21.32 | 43.52 |
| Zm00001d009343_P001 | Maize | mitochondrion | 19.8 | 40.62 |
| Zm00001d051261_P001 | Maize | cytosol | 21.07 | 40.29 |
| Zm00001d052602_P001 | Maize | extracellular | 12.94 | 38.93 |
| Zm00001d045775_P001 | Maize | cytosol | 9.39 | 38.54 |
| Zm00001d036575_P001 | Maize | mitochondrion | 20.05 | 38.35 |
| Zm00001d015887_P001 | Maize | cytosol | 14.47 | 38.0 |
| GSMUA_Achr5P27000_001 | Banana | cytosol | 23.6 | 37.65 |
| Zm00001d034790_P001 | Maize | peroxisome | 23.6 | 37.65 |
| GSMUA_Achr11P... | Banana | cytosol | 23.35 | 37.25 |
| EER90550 | Sorghum | cytosol | 24.87 | 37.12 |
| Zm00001d030402_P001 | Maize | cytosol, plastid | 18.27 | 37.11 |
| Zm00001d012878_P001 | Maize | plasma membrane | 24.87 | 36.98 |
| Zm00001d024029_P001 | Maize | cytosol | 10.66 | 36.84 |
| HORVU1Hr1G021720.1 | Barley | cytosol | 24.62 | 36.6 |
| Os02t0105900-01 | Rice | nucleus | 24.62 | 36.6 |
| TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 24.62 | 36.6 |
| TraesCS1B01G120600.1 | Wheat | cytosol | 24.62 | 36.6 |
| TraesCS1D01G101600.1 | Wheat | cytosol | 24.62 | 36.6 |
| Zm00001d008887_P002 | Maize | cytosol | 23.86 | 35.34 |
| Zm00001d005030_P009 | Maize | cytosol | 10.91 | 35.25 |
| Zm00001d019486_P001 | Maize | cytosol | 17.51 | 33.66 |
| Zm00001d037876_P001 | Maize | cytosol | 22.84 | 33.21 |
| Zm00001d016333_P001 | Maize | cytosol | 23.35 | 32.86 |
| GSMUA_Achr2P01640_001 | Banana | cytosol | 25.63 | 32.48 |
| Zm00001d015817_P002 | Maize | plastid | 22.59 | 32.36 |
| GSMUA_Achr3P23970_001 | Banana | cytosol | 24.87 | 32.24 |
| GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 25.13 | 32.14 |
| Zm00001d010037_P001 | Maize | mitochondrion | 10.15 | 29.85 |
| Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 10.91 | 29.66 |
| Zm00001d009287_P001 | Maize | cytosol | 10.15 | 29.63 |
| Zm00001d031460_P001 | Maize | cytosol | 9.9 | 29.32 |
| Zm00001d019999_P001 | Maize | cytosol | 22.59 | 28.9 |
| Zm00001d050845_P002 | Maize | cytosol | 13.2 | 26.4 |
| Zm00001d045627_P001 | Maize | cytosol, plastid | 11.68 | 25.56 |
| Zm00001d045958_P001 | Maize | cytosol | 23.86 | 25.34 |
| Zm00001d031743_P001 | Maize | cytosol | 12.44 | 24.38 |
| Zm00001d046153_P001 | Maize | plastid | 17.26 | 21.52 |
| Zm00001d045876_P002 | Maize | plasma membrane | 11.68 | 21.4 |
| Zm00001d042154_P021 | Maize | plastid | 24.11 | 20.04 |
| Zm00001d050009_P001 | Maize | plastid | 4.57 | 18.37 |
| Zm00001d021480_P001 | Maize | plasma membrane | 11.68 | 17.9 |
| Zm00001d019803_P001 | Maize | cytosol | 10.91 | 17.84 |
| Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 12.18 | 16.55 |
| Zm00001d013036_P001 | Maize | plastid | 12.18 | 15.48 |
| Zm00001d001770_P002 | Maize | plastid | 14.21 | 14.21 |
| Zm00001d035807_P001 | Maize | cytosol | 12.69 | 14.01 |
| Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 11.42 | 13.72 |
| Zm00001d036129_P001 | Maize | vacuole | 12.18 | 11.88 |
| Zm00001d004587_P001 | Maize | plastid | 5.33 | 8.5 |
| Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 1.52 | 7.06 |
| Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 13.71 | 6.87 |
| Zm00001d019111_P002 | Maize | mitochondrion | 4.82 | 6.48 |
| Zm00001d010387_P001 | Maize | plastid | 2.54 | 5.52 |
| Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 2.28 | 5.49 |
| Zm00001d049253_P001 | Maize | extracellular | 1.78 | 3.24 |
Protein Annotations
| Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | MapMan:35.1 | UniProt:A0A1D6NZY2 | ProteinID:AQL03460.1 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR014722 | InterPro:IPR038237 | PFAM:PD002667 | PFAM:PF00900 | PANTHER:PTHR11581 |
| PANTHER:PTHR11581:SF10 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | UniParc:UPI000843A373 |
| EnsemblPlantsGene:Zm00001d045942 | EnsemblPlants:Zm00001d045942_P001 | EnsemblPlants:Zm00001d045942_T001 | SEG:seg | : | : |
Description
40S ribosomal protein S4-3
Coordinates
chr9:-:48343839..48346590
Molecular Weight (calculated)
38886.2 Da
IEP (calculated)
11.878
GRAVY (calculated)
-0.836
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDGRGGSP ERRPSTGAGG SPGGDRAGAQ GGRARRGAAK TRHEGGGEGA AEDGDGGGSP DAAELAGGGR AGVGARRGGA WHGKAGPVRD ARAGAGRGGA
101: GDGRSGHGEA GPAEVGDRGG LPDAAEARAG KGRGGSPEGG RARGGRAEAR WGGAELAGGG RAGVGAGRGG LAGARRGRTG AGRPSRGRAR RGSPEAAEPG
201: GIERTGPGAA EPGWGRGGAG SPGHDEVGPA RDARAGAGRG RHGGAGLAGG GRAGRHRADG AALPRRGAGA GPGWRAGERR RQGERGKGGE GASPRWGRPA
301: AALGEGAAAV RKGIPYLNTY DGRTIRYPDP LIKANDTIKI DLETNKIMDF IKFDVGNMVT GGRNTRRVGV IKHREKHKGS FETIHVLLGA FCYV
101: GDGRSGHGEA GPAEVGDRGG LPDAAEARAG KGRGGSPEGG RARGGRAEAR WGGAELAGGG RAGVGAGRGG LAGARRGRTG AGRPSRGRAR RGSPEAAEPG
201: GIERTGPGAA EPGWGRGGAG SPGHDEVGPA RDARAGAGRG RHGGAGLAGG GRAGRHRADG AALPRRGAGA GPGWRAGERR RQGERGKGGE GASPRWGRPA
301: AALGEGAAAV RKGIPYLNTY DGRTIRYPDP LIKANDTIKI DLETNKIMDF IKFDVGNMVT GGRNTRRVGV IKHREKHKGS FETIHVLLGA FCYV
001: MLDKLGGAFA PKPSSGPHKS RECLPLVLII RNRLKYALTY REVISILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEN FRLLYDTKGR FRLHSIKDEE
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
101: AKFKLCKVRS IQFGQKGIPY LNTYDGRTIR YPDPLIKPND TIKLDLEENK IVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDSTGHEF
201: ATRLGNVYTI GKGTKPWVSL PKGKGIKLTI IEEARKRLAS QQAA
Arabidopsis Description
RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.