Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d015481_P001 | Maize | cytosol | 68.97 | 79.21 |
Zm00001d035215_P001 | Maize | cytosol | 46.55 | 66.67 |
Zm00001d006068_P001 | Maize | cytosol | 69.83 | 63.78 |
Zm00001d005247_P001 | Maize | mitochondrion | 76.72 | 62.24 |
Zm00001d037427_P001 | Maize | extracellular | 72.41 | 62.22 |
Zm00001d033604_P001 | Maize | mitochondrion | 68.97 | 60.15 |
Zm00001d033737_P001 | Maize | cytosol | 44.83 | 59.09 |
Zm00001d005432_P003 | Maize | cytosol, mitochondrion | 68.97 | 58.82 |
Zm00001d031575_P001 | Maize | extracellular | 69.83 | 55.86 |
Zm00001d009518_P001 | Maize | cytosol | 74.14 | 49.71 |
Zm00001d035647_P001 | Maize | cytosol | 62.07 | 49.66 |
Zm00001d030502_P001 | Maize | cytosol | 56.03 | 46.43 |
Zm00001d019693_P001 | Maize | cytosol, plastid | 69.83 | 44.75 |
Zm00001d004105_P001 | Maize | extracellular, plastid | 74.14 | 44.56 |
Zm00001d000121_P001 | Maize | cytosol | 41.38 | 44.04 |
Zm00001d053283_P002 | Maize | cytosol | 68.1 | 43.17 |
Zm00001d004880_P001 | Maize | cytosol | 38.79 | 42.06 |
Zm00001d009343_P001 | Maize | mitochondrion | 68.1 | 41.15 |
Zm00001d005030_P009 | Maize | cytosol | 42.24 | 40.16 |
Zm00001d036575_P001 | Maize | mitochondrion | 70.69 | 39.81 |
Zm00001d015857_P002 | Maize | cytosol | 42.24 | 38.89 |
Zm00001d051261_P001 | Maize | cytosol | 68.97 | 38.84 |
Zm00001d052602_P001 | Maize | extracellular | 43.1 | 38.17 |
Zm00001d045775_P001 | Maize | cytosol | 30.17 | 36.46 |
Zm00001d019486_P001 | Maize | cytosol | 61.21 | 34.63 |
GSMUA_Achr11P... | Banana | cytosol | 73.28 | 34.41 |
GSMUA_Achr5P27000_001 | Banana | cytosol | 73.28 | 34.41 |
Zm00001d010386_P002 | Maize | extracellular, peroxisome, plasma membrane | 42.24 | 33.79 |
Zm00001d034790_P001 | Maize | peroxisome | 71.55 | 33.6 |
Zm00001d015887_P001 | Maize | cytosol | 43.1 | 33.33 |
Zm00001d024029_P001 | Maize | cytosol | 32.76 | 33.33 |
TraesCS1B01G120600.1 | Wheat | cytosol | 74.14 | 32.45 |
HORVU1Hr1G021720.1 | Barley | cytosol | 74.14 | 32.45 |
Os02t0105900-01 | Rice | nucleus | 74.14 | 32.45 |
TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 74.14 | 32.45 |
TraesCS1D01G101600.1 | Wheat | cytosol | 74.14 | 32.45 |
EER90550 | Sorghum | cytosol | 73.28 | 32.2 |
Zm00001d012878_P001 | Maize | plasma membrane | 73.28 | 32.08 |
Zm00001d037876_P001 | Maize | cytosol | 73.28 | 31.37 |
Zm00001d015817_P002 | Maize | plastid | 74.14 | 31.27 |
Zm00001d008887_P002 | Maize | cytosol | 71.55 | 31.2 |
Zm00001d010037_P001 | Maize | mitochondrion | 33.62 | 29.1 |
Zm00001d016333_P001 | Maize | cytosol | 69.83 | 28.93 |
GSMUA_Achr3P23970_001 | Banana | cytosol | 74.14 | 28.29 |
GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 75.0 | 28.25 |
Zm00001d030402_P001 | Maize | cytosol, plastid | 46.55 | 27.84 |
Zm00001d031460_P001 | Maize | cytosol | 31.03 | 27.07 |
GSMUA_Achr2P01640_001 | Banana | cytosol | 72.41 | 27.01 |
Zm00001d009287_P001 | Maize | cytosol | 31.03 | 26.67 |
Zm00001d019999_P001 | Maize | cytosol | 66.38 | 25.0 |
Zm00001d050845_P002 | Maize | cytosol | 42.24 | 24.87 |
Zm00001d045627_P001 | Maize | cytosol, plastid | 33.62 | 21.67 |
Zm00001d045958_P001 | Maize | cytosol | 68.97 | 21.56 |
Zm00001d050009_P001 | Maize | plastid | 17.24 | 20.41 |
Zm00001d046153_P001 | Maize | plastid | 52.59 | 19.3 |
Zm00001d031743_P001 | Maize | cytosol | 32.76 | 18.91 |
Zm00001d045942_P001 | Maize | cytosol | 59.48 | 17.51 |
Zm00001d004990_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 43.1 | 17.24 |
Zm00001d045876_P002 | Maize | plasma membrane | 31.9 | 17.21 |
Zm00001d013036_P001 | Maize | plastid | 43.1 | 16.13 |
Zm00001d042154_P021 | Maize | plastid | 64.66 | 15.82 |
Zm00001d019803_P001 | Maize | cytosol | 32.76 | 15.77 |
Zm00001d021480_P001 | Maize | plasma membrane | 33.62 | 15.18 |
Zm00001d049112_P001 | Maize | cytosol, peroxisome, plastid | 41.38 | 14.63 |
Zm00001d035807_P001 | Maize | cytosol | 41.38 | 13.45 |
Zm00001d036129_P001 | Maize | vacuole | 43.1 | 12.38 |
Zm00001d001770_P002 | Maize | plastid | 40.52 | 11.93 |
Zm00001d019111_P002 | Maize | mitochondrion | 21.55 | 8.53 |
Zm00001d005608_P001 | Maize | endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole | 43.97 | 6.49 |
Zm00001d041311_P002 | Maize | cytosol, extracellular, nucleus | 4.31 | 5.88 |
Zm00001d004587_P001 | Maize | plastid | 12.07 | 5.67 |
Zm00001d050003_P001 | Maize | endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid | 6.9 | 4.88 |
Zm00001d010387_P001 | Maize | plastid | 6.03 | 3.87 |
Zm00001d049253_P001 | Maize | extracellular | 6.03 | 3.24 |
Protein Annotations
Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | MapMan:35.1 | UniProt:A0A1D6PZL6 | ProteinID:AQK51864.1 | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR014722 | InterPro:IPR038237 |
PFAM:PD002667 | PFAM:PF00900 | PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e |
InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | SignalP:SignalP-noTM | UniParc:UPI00084326A7 | EnsemblPlantsGene:Zm00001d050071 | EnsemblPlants:Zm00001d050071_P001 |
EnsemblPlants:Zm00001d050071_T001 | SEG:seg | : | : | : | : |
Description
Putative ribosomal protein S4 (RPS4A) family protein
Coordinates
chr4:+:64002040..64002390
Molecular Weight (calculated)
13204.3 Da
IEP (calculated)
9.010
GRAVY (calculated)
0.067
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFPSCEMLT AFLLVCVQLK LCKVRSVQFG QKGIPYLNTY NGRTIRYPDP LIKANDTIKI DLENNKIMDF FKFDIGNVVM VTGGRNTRCV GVIKNWEKHK
101: GSFEVIDVQL GAFCYV
101: GSFEVIDVQL GAFCYV
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A
Arabidopsis Description
RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.