Factsheet for Zm00001d037427_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015481_P001	Maize	cytosol	70.37	94.06
Zm00001d035215_P001	Maize	cytosol	44.44	74.07
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	62.22	72.41
Zm00001d005432_P003	Maize	cytosol, mitochondrion	71.11	70.59
Zm00001d006068_P001	Maize	cytosol	62.96	66.93
Zm00001d033737_P001	Maize	cytosol	39.26	60.23
Zm00001d005247_P001	Maize	mitochondrion	62.96	59.44
Zm00001d031575_P001	Maize	extracellular	63.7	59.31
Zm00001d033604_P001	Maize	mitochondrion	57.78	58.65
Zm00001d019693_P001	Maize	cytosol, plastid	74.81	55.8
Zm00001d004880_P001	Maize	cytosol	42.22	53.27
Zm00001d030502_P001	Maize	cytosol	54.07	52.14
Zm00001d004105_P001	Maize	extracellular, plastid	71.11	49.74
Zm00001d009518_P001	Maize	cytosol	63.7	49.71
Zm00001d035647_P001	Maize	cytosol	53.33	49.66
Zm00001d000121_P001	Maize	cytosol	38.52	47.71
Zm00001d053283_P002	Maize	cytosol	63.7	46.99
Zm00001d015857_P002	Maize	cytosol	42.96	46.03
Zm00001d009343_P001	Maize	mitochondrion	63.7	44.79
Zm00001d045775_P001	Maize	cytosol	31.11	43.75
Zm00001d005030_P009	Maize	cytosol	38.52	42.62
Zm00001d051261_P001	Maize	cytosol	64.44	42.23
Zm00001d052602_P001	Maize	extracellular	38.52	39.69
Zm00001d034790_P001	Maize	peroxisome	72.59	39.68
GSMUA_Achr11P...	Banana	cytosol	71.85	39.27
GSMUA_Achr5P27000_001	Banana	cytosol	71.11	38.87
Zm00001d036575_P001	Maize	mitochondrion	59.26	38.84
Zm00001d037876_P001	Maize	cytosol	76.3	38.01
EER90550	Sorghum	cytosol	73.33	37.5
Zm00001d012878_P001	Maize	plasma membrane	73.33	37.36
Zm00001d019486_P001	Maize	cytosol	56.3	37.07
Os02t0105900-01	Rice	nucleus	72.59	36.98
TraesCS1B01G120600.1	Wheat	cytosol	71.85	36.6
HORVU1Hr1G021720.1	Barley	cytosol	71.85	36.6
TraesCS1A01G092900.1	Wheat	golgi, nucleus	71.85	36.6
TraesCS1D01G101600.1	Wheat	cytosol	71.85	36.6
Zm00001d015887_P001	Maize	cytosol	40.0	36.0
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	37.78	35.17
Zm00001d030402_P001	Maize	cytosol, plastid	47.41	32.99
Zm00001d008887_P002	Maize	cytosol	64.44	32.71
Zm00001d016333_P001	Maize	cytosol	67.41	32.5
GSMUA_Achr3P23970_001	Banana	cytosol	71.85	31.91
Zm00001d015817_P002	Maize	plastid	64.44	31.64
Zm00001d031460_P001	Maize	cytosol	31.11	31.58
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	71.85	31.49
Zm00001d019999_P001	Maize	cytosol	71.11	31.17
GSMUA_Achr2P01640_001	Banana	cytosol	71.11	30.87
Zm00001d024029_P001	Maize	cytosol	25.93	30.7
Zm00001d009287_P001	Maize	cytosol	28.15	28.15
Zm00001d010037_P001	Maize	mitochondrion	27.41	27.61
Zm00001d050845_P002	Maize	cytosol	37.78	25.89
Zm00001d045958_P001	Maize	cytosol	65.93	23.99
Zm00001d050009_P001	Maize	plastid	17.04	23.47
Zm00001d045627_P001	Maize	cytosol, plastid	27.41	20.56
Zm00001d031743_P001	Maize	cytosol	29.63	19.9
Zm00001d045942_P001	Maize	cytosol	57.78	19.8
Zm00001d046153_P001	Maize	plastid	45.93	19.62
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	40.74	18.97
Zm00001d045876_P002	Maize	plasma membrane	28.89	18.14
Zm00001d042154_P021	Maize	plastid	62.96	17.93
Zm00001d013036_P001	Maize	plastid	40.74	17.74
Zm00001d019803_P001	Maize	cytosol	28.89	16.18
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	38.52	15.85
Zm00001d035807_P001	Maize	cytosol	38.52	14.57
Zm00001d021480_P001	Maize	plasma membrane	27.41	14.4
Zm00001d001770_P002	Maize	plastid	40.0	13.71
Zm00001d036129_P001	Maize	vacuole	38.52	12.87
Zm00001d019111_P002	Maize	mitochondrion	19.26	8.87
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	43.7	7.51
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	4.44	7.06
Zm00001d004587_P001	Maize	plastid	10.37	5.67
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	4.44	3.66
Zm00001d010387_P001	Maize	plastid	4.44	3.31
Zm00001d049253_P001	Maize	extracellular	5.19	3.24

Protein Annotations

EntrezGene:100383683	Gene3D:2.30.30.30	Gene3D:2.40.50.740	MapMan:35.1	UniProt:A0A1D6LXT2	ProteinID:AQK83964.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	SMART:SM00739	UniParc:UPI00084574ED	EnsemblPlantsGene:Zm00001d037427	EnsemblPlants:Zm00001d037427_P001
EnsemblPlants:Zm00001d037427_T001	SEG:seg	:	:	:	:

Description

40S ribosomal protein S4-3

Coordinates

chr6:+:125220572..125223061

Molecular Weight (calculated)

15184.8 Da

IEP (calculated)

8.673

GRAVY (calculated)

0.147

Length

135 amino acids

Sequence
(BLAST)

001: MLDKLGGAFI CVPYPCYTVH ICCVHESLAL KMSCATIFML CKVRSVQFGQ KGIPYLNTYD DRTIRYPDPL IKANDTIKID LETNKIMDFI KFDVGNVVMV
101: TGGRNTGRVG VIKNREKHKG SFETIHVLLG AFCYV

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.