Factsheet for GSMUA_Achr3P23970_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
mitochondrion 3
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	79.28	97.57
GSMUA_Achr5P27000_001	Banana	cytosol	78.95	97.17
KRH08064	Soybean	nucleus	81.58	93.94
KRH76010	Soybean	endoplasmic reticulum	81.58	93.94
KRH14914	Soybean	nucleus	81.25	93.56
KRH65626	Soybean	nucleus	81.25	93.56
KRH69777	Soybean	endoplasmic reticulum	81.25	93.56
KRH73264	Soybean	endoplasmic reticulum	81.25	93.56
VIT_13s0067g01820.t01	Wine grape	cytosol	75.0	92.68
AT2G17360.1	Thale cress	mitochondrion	79.28	92.34
Solyc06g007360.2.1	Tomato	plastid	79.93	92.05
AT5G07090.1	Thale cress	mitochondrion	79.28	91.98
AT5G58420.1	Thale cress	mitochondrion	79.28	91.98
Bra028708.1-P	Field mustard	cytosol	79.28	91.98
EES18108	Sorghum	cytosol	79.28	91.64
HORVU1Hr1G021720.1	Barley	cytosol	79.61	91.32
TraesCS1A01G092900.1	Wheat	golgi, nucleus	79.61	91.32
TraesCS1B01G120600.1	Wheat	cytosol	79.61	91.32
TraesCS1D01G101600.1	Wheat	cytosol	79.61	91.32
Zm00001d012878_P001	Maize	plasma membrane	79.61	91.32
EER90550	Sorghum	cytosol	79.28	91.29
Os05t0368300-01	Rice	nucleus	78.95	91.25
EES00734	Sorghum	cytosol	79.28	90.94
Os01t0358400-01	Rice	nucleus, plasma membrane	79.28	90.94
Solyc02g070360.2.1	Tomato	nucleus	78.95	90.91
Os02t0105900-01	Rice	nucleus	78.95	90.57
Solyc02g070330.2.1	Tomato	mitochondrion	78.62	90.53
Solyc02g070340.2.1	Tomato	mitochondrion	78.62	90.53
Solyc02g070350.2.1	Tomato	nucleus, unclear	78.62	90.53
PGSC0003DMT400054543	Potato	mitochondrion	78.29	90.15
Solyc02g070320.2.1	Tomato	nucleus, unclear	78.29	90.15
CDX70008	Canola	cytosol	78.62	88.85
Solyc04g016350.1.1	Tomato	nucleus, unclear	72.37	88.0
Zm00001d034790_P001	Maize	peroxisome	71.38	87.85
CDX91445	Canola	cytosol	46.38	87.04
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	87.83	86.69
CDY02821	Canola	cytosol	77.96	86.18
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	79.61	85.82
VIT_00s0252g00080.t01	Wine grape	nucleus	30.59	85.32
CDX81032	Canola	extracellular	78.29	85.3
CDY58877	Canola	cytosol	78.29	85.3
Bra005923.1-P	Field mustard	cytosol	77.96	84.95
TraesCS1A01G232700.1	Wheat	cytosol	70.39	84.92
CDY60025	Canola	cytosol	78.62	83.86
Zm00001d005432_P003	Maize	cytosol, mitochondrion	37.5	83.82
CDX99006	Canola	extracellular	79.28	83.68
GSMUA_Achr2P01640_001	Banana	cytosol	85.2	83.28
Zm00001d015481_P001	Maize	cytosol	27.63	83.17
CDY32986	Canola	cytosol	78.62	82.99
CDY14056	Canola	cytosol	78.95	82.47
Zm00001d045775_P001	Maize	cytosol	25.99	82.29
PGSC0003DMT400052955	Potato	cytosol	50.33	82.26
VIT_06s0004g07150.t01	Wine grape	cytosol	80.92	81.46
CDY57385	Canola	cytosol, plastid	79.61	81.21
CDY32700	Canola	extracellular	79.28	80.07
Bra020369.1-P	Field mustard	cytosol	78.95	79.73
CDY05015	Canola	cytosol	79.61	79.34
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	23.36	78.89
Zm00001d019693_P001	Maize	cytosol, plastid	46.71	78.45
CDX91447	Canola	cytosol, mitochondrion	12.5	77.55
CDY69841	Canola	mitochondrion	78.95	77.17
KXG32490	Sorghum	cytosol	35.2	76.98
Zm00001d050071_P001	Maize	endoplasmic reticulum, extracellular	28.29	74.14
Zm00001d035215_P001	Maize	cytosol	19.41	72.84
Zm00001d004105_P001	Maize	extracellular, plastid	45.72	72.02
Zm00001d037427_P001	Maize	extracellular	31.91	71.85
Zm00001d030402_P001	Maize	cytosol, plastid	44.08	69.07
Zm00001d006068_P001	Maize	cytosol	28.62	68.5
Zm00001d005247_P001	Maize	mitochondrion	31.58	67.13
Zm00001d033604_P001	Maize	mitochondrion	28.62	65.41
Zm00001d031575_P001	Maize	extracellular	30.59	64.14
KRH04718	Soybean	cytosol	40.46	64.06
Zm00001d033737_P001	Maize	cytosol	18.42	63.64
KRH04720	Soybean	cytosol, endoplasmic reticulum	41.45	61.76
Zm00001d000121_P001	Maize	cytosol	21.05	58.72
Zm00001d031460_P001	Maize	cytosol	25.33	57.89
Zm00001d035647_P001	Maize	cytosol	27.3	57.24
Zm00001d009518_P001	Maize	cytosol	32.57	57.23
Bra005118.1-P	Field mustard	cytosol	22.7	56.56
CDY54450	Canola	cytosol	22.7	56.56
CDY52257	Canola	cytosol, mitochondrion	7.57	56.1
Zm00001d037876_P001	Maize	cytosol	50.0	56.09
Zm00001d030502_P001	Maize	cytosol	25.66	55.71
Zm00001d004880_P001	Maize	cytosol	19.41	55.14
Zm00001d053283_P002	Maize	cytosol	32.24	53.55
Zm00001d015857_P002	Maize	cytosol	21.71	52.38
Zm00001d019999_P001	Maize	cytosol	50.66	50.0
Zm00001d024029_P001	Maize	cytosol	18.75	50.0
Zm00001d052602_P001	Maize	extracellular	21.38	49.62
Zm00001d009343_P001	Maize	mitochondrion	30.92	48.96
Zm00001d051261_P001	Maize	cytosol	32.57	48.06
Zm00001d036575_P001	Maize	mitochondrion	31.91	47.09
Zm00001d005030_P009	Maize	cytosol	18.42	45.9
Zm00001d015887_P001	Maize	cytosol	21.71	44.0
Zm00001d019486_P001	Maize	cytosol	28.95	42.93
Bra033109.1-P	Field mustard	cytosol	15.13	39.32
CDY68858	Canola	cytosol	15.13	39.32
Zm00001d010386_P002	Maize	extracellular, peroxisome, plasma membrane	18.75	39.31
Zm00001d008887_P002	Maize	cytosol	33.55	38.35
Zm00001d015817_P002	Maize	plastid	33.55	37.09
Zm00001d031743_P001	Maize	cytosol	23.68	35.82
Zm00001d016333_P001	Maize	cytosol	32.24	35.0
Zm00001d045627_P001	Maize	cytosol, plastid	20.39	34.44
Zm00001d050845_P002	Maize	cytosol	21.05	32.49
CDY04355	Canola	cytosol	20.07	31.12
Zm00001d009287_P001	Maize	cytosol	13.49	30.37
Zm00001d045876_P002	Maize	plasma membrane	20.72	29.3
Zm00001d045958_P001	Maize	cytosol	35.2	28.84
Zm00001d021480_P001	Maize	plasma membrane	22.04	26.07
Zm00001d045942_P001	Maize	cytosol	32.24	24.87
Zm00001d019803_P001	Maize	cytosol	19.41	24.48
Zm00001d046153_P001	Maize	plastid	24.34	23.42
Zm00001d004990_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	22.04	23.1
Zm00001d013036_P001	Maize	plastid	21.71	21.29
Zm00001d042154_P021	Maize	plastid	32.24	20.68
Zm00001d035807_P001	Maize	cytosol	22.37	19.05
CDY42359	Canola	cytosol	7.24	17.74
CDY71580	Canola	cytosol	6.58	16.95
CDY00352	Canola	cytosol	7.24	16.92
Zm00001d001770_P002	Maize	plastid	21.38	16.5
Zm00001d049112_P001	Maize	cytosol, peroxisome, plastid	17.76	16.46
Zm00001d004587_P001	Maize	plastid	13.16	16.19
Zm00001d036129_P001	Maize	vacuole	19.41	14.6
CDY36197	Canola	cytosol	5.26	12.4
Zm00001d019111_P002	Maize	mitochondrion	10.53	10.92
Zm00001d005608_P001	Maize	endoplasmic reticulum, mitochondrion, plasma membrane, plastid, vacuole	23.03	8.91

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr3G23970_001	EnsemblPlants:GSMUA_Achr3P23970_001	EnsemblPlants:GSMUA_Achr3T23970_001	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	UniProt:M0SHB3	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889
PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	UniParc:UPI0002961F64
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G23970_001]

Coordinates

chr3:-:24662363..24665434

Molecular Weight (calculated)

34088.8 Da

IEP (calculated)

11.117

GRAVY (calculated)

-0.508

Length

304 amino acids

Sequence
(BLAST)

001: MRVRRIRGSS TENQHEMPPS TLPSSRGGGA QTGGRHPKKM ARGLKKHLKR LNAPKHWMLD KLGGAFAPKP SSGPHKAREC LPLILILRNK LKYALTYREV
101: IAILMQRHVM VDGKVRTDKT YPAGFMDVVS IPKTNENFRL LYDTKGRFRL HSIRDEEAKF KLCKVRSVQF GQKGIPYLNT YDGRTIRYPD PLIKANDTIK
201: LDLETNKIVD FIKFDVGNVV MVTGGRNTGR VGVIKNREKH KGSFETIHIQ DATGHEFATR LGNVFTIGKA TKPWVSLPKG KGIKLSIIEE ARKRLAAANA
301: TATA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.