Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os05t0368300-01 | Rice | nucleus | 87.7 | 84.03 |
EES18108 | Sorghum | cytosol | 87.3 | 83.65 |
TraesCS1A01G092900.1 | Wheat | golgi, nucleus | 85.71 | 81.51 |
GSMUA_Achr11P... | Banana | cytosol | 77.78 | 79.35 |
KRH69777 | Soybean | endoplasmic reticulum | 82.94 | 79.17 |
KRH08064 | Soybean | nucleus | 82.94 | 79.17 |
GSMUA_Achr5P27000_001 | Banana | cytosol | 77.38 | 78.95 |
AT2G17360.1 | Thale cress | mitochondrion | 81.75 | 78.93 |
KRH73264 | Soybean | endoplasmic reticulum | 82.54 | 78.79 |
AT5G07090.1 | Thale cress | mitochondrion | 81.75 | 78.63 |
AT5G58420.1 | Thale cress | mitochondrion | 81.75 | 78.63 |
KRH14914 | Soybean | nucleus | 82.14 | 78.41 |
Bra028708.1-P | Field mustard | cytosol | 81.35 | 78.24 |
KRH65626 | Soybean | nucleus | 81.75 | 78.03 |
KRH76010 | Soybean | endoplasmic reticulum | 81.75 | 78.03 |
VIT_00s0252g00080.t01 | Wine grape | nucleus | 33.73 | 77.98 |
Solyc06g007360.2.1 | Tomato | plastid | 81.35 | 77.65 |
Solyc02g070360.2.1 | Tomato | nucleus | 80.95 | 77.27 |
Solyc02g070340.2.1 | Tomato | mitochondrion | 80.56 | 76.89 |
Solyc02g070330.2.1 | Tomato | mitochondrion | 80.56 | 76.89 |
Solyc02g070350.2.1 | Tomato | nucleus, unclear | 80.56 | 76.89 |
VIT_13s0067g01820.t01 | Wine grape | cytosol | 75.0 | 76.83 |
Solyc02g070320.2.1 | Tomato | nucleus, unclear | 80.16 | 76.52 |
PGSC0003DMT400054543 | Potato | mitochondrion | 80.16 | 76.52 |
CDX70008 | Canola | cytosol | 80.95 | 75.84 |
Solyc04g016350.1.1 | Tomato | nucleus, unclear | 75.0 | 75.6 |
CDX91445 | Canola | cytosol | 48.02 | 74.69 |
CDY02821 | Canola | cytosol | 80.16 | 73.45 |
CDY58877 | Canola | cytosol | 80.95 | 73.12 |
CDX81032 | Canola | extracellular | 80.95 | 73.12 |
Bra005923.1-P | Field mustard | cytosol | 80.56 | 72.76 |
VIT_08s0058g00390.t01 | Wine grape | mitochondrion, plastid | 80.95 | 72.34 |
CDY60025 | Canola | cytosol | 81.35 | 71.93 |
CDY32986 | Canola | cytosol | 81.75 | 71.53 |
CDX91447 | Canola | cytosol, mitochondrion | 13.89 | 71.43 |
CDX99006 | Canola | extracellular | 81.35 | 71.18 |
CDY14056 | Canola | cytosol | 81.35 | 70.45 |
GSMUA_Achr3P23970_001 | Banana | cytosol | 84.92 | 70.39 |
CDY57385 | Canola | cytosol, plastid | 82.14 | 69.46 |
GSMUA_Achr3P00760_001 | Banana | cytosol, plasma membrane | 84.52 | 69.16 |
GSMUA_Achr2P01640_001 | Banana | cytosol | 84.13 | 68.17 |
VIT_06s0004g07150.t01 | Wine grape | cytosol | 80.95 | 67.55 |
PGSC0003DMT400052955 | Potato | cytosol | 49.6 | 67.2 |
CDY05015 | Canola | cytosol | 80.95 | 66.89 |
CDY32700 | Canola | extracellular | 79.37 | 66.45 |
Bra020369.1-P | Field mustard | cytosol | 78.97 | 66.11 |
CDY69841 | Canola | mitochondrion | 81.35 | 65.92 |
VIT_00s0252g00100.t01 | Wine grape | cytosol, mitochondrion | 22.62 | 63.33 |
Bra005118.1-P | Field mustard | cytosol | 24.6 | 50.82 |
CDY54450 | Canola | cytosol | 24.6 | 50.82 |
KRH04718 | Soybean | cytosol | 38.49 | 50.52 |
CDY52257 | Canola | cytosol, mitochondrion | 7.94 | 48.78 |
KRH04720 | Soybean | cytosol, endoplasmic reticulum | 38.1 | 47.06 |
Bra033109.1-P | Field mustard | cytosol | 15.87 | 34.19 |
CDY68858 | Canola | cytosol | 15.87 | 34.19 |
CDY04355 | Canola | cytosol | 19.84 | 25.51 |
CDY42359 | Canola | cytosol | 7.14 | 14.52 |
CDY00352 | Canola | cytosol | 7.14 | 13.85 |
CDY71580 | Canola | cytosol | 6.35 | 13.56 |
CDY36197 | Canola | cytosol | 5.56 | 10.85 |
Protein Annotations
MapMan:17.1.3.1.5 | Gene3D:2.30.30.30 | Gene3D:2.40.50.740 | Gene3D:3.10.290.40 | InterPro:40S_S4_C | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR002942 | InterPro:IPR014722 |
InterPro:IPR038237 | InterPro:KOW | HAMAP:MF_00485 | PFAM:PD002667 | PFAM:PF00467 | PFAM:PF00900 |
PFAM:PF01479 | PFAM:PF08071 | PFAM:PF16121 | PIRSF:PIRSF002116 | ScanProsite:PS00528 | PFscan:PS50889 |
PANTHER:PTHR11581 | PANTHER:PTHR11581:SF10 | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_S4e | InterPro:Ribosomal_S4e_N | InterPro:Ribosomal_S4e_N_CS |
InterPro:Ribosomal_S4e_central_region | InterPro:Ribosomal_S4e_central_sf | InterPro:S4_RNA-bd | SMART:SM00363 | SMART:SM00739 | EnsemblPlantsGene:TraesCS1A01G232700 |
EnsemblPlants:TraesCS1A01G232700.1 | TIGR:cd00165 | TIGR:cd06087 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1A:+:406154225..406156119
Molecular Weight (calculated)
28394.0 Da
IEP (calculated)
10.723
GRAVY (calculated)
-0.338
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGLKKHVK RLNAPKHWMV EKLGGAFAPK PSSGPHKARE CLPLILMLRN RLKYALTYRE VVSIMMQRHI MVDGEVRTDK TYPAGFMDVV SIPKTGENFR
101: LLYDTKGRFF KLCKVRTVQC GQKGVPSLNT YDGRTIRYPD PAIKPNDTIK IELDTNKIVD FIKFEVGNFV MVTGGRNTGR IGVIKSREKH EGSFETIHVE
201: DALSHQFATR LANVFTIGKD RKAWVSLPKG KGIKLTIIEE ARKRIAAAAA EA
101: LLYDTKGRFF KLCKVRTVQC GQKGVPSLNT YDGRTIRYPD PAIKPNDTIK IELDTNKIVD FIKFEVGNFV MVTGGRNTGR IGVIKSREKH EGSFETIHVE
201: DALSHQFATR LANVFTIGKD RKAWVSLPKG KGIKLTIIEE ARKRIAAAAA EA
001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA
Arabidopsis Description
RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.