CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04720	Soybean	cytosol, endoplasmic reticulum	64.06	60.29
PGSC0003DMT400052955	Potato	cytosol	57.81	59.68
GSMUA_Achr11P...	Banana	cytosol	65.1	50.61
GSMUA_Achr5P27000_001	Banana	cytosol	64.58	50.2
KRH14914	Soybean	nucleus	67.19	48.86
KRH08064	Soybean	nucleus	66.67	48.48
KRH73264	Soybean	endoplasmic reticulum	66.15	48.11
KRH69777	Soybean	endoplasmic reticulum	66.15	48.11
KRH76010	Soybean	endoplasmic reticulum	64.58	46.97
KRH65626	Soybean	nucleus	64.58	46.97
AT2G17360.1	Thale cress	mitochondrion	63.54	46.74
AT5G07090.1	Thale cress	mitochondrion	63.54	46.56
AT5G58420.1	Thale cress	mitochondrion	63.54	46.56
Bra028708.1-P	Field mustard	cytosol	63.54	46.56
Solyc06g007360.2.1	Tomato	plastid	62.5	45.45
EER90550	Sorghum	cytosol	61.98	45.08
EES00734	Sorghum	cytosol	61.98	44.91
EES18108	Sorghum	cytosol	60.94	44.49
TraesCS1D01G101600.1	Wheat	cytosol	60.94	44.15
TraesCS1A01G092900.1	Wheat	golgi, nucleus	60.94	44.15
HORVU1Hr1G021720.1	Barley	cytosol	60.94	44.15
TraesCS1B01G120600.1	Wheat	cytosol	60.94	44.15
Solyc02g070360.2.1	Tomato	nucleus	60.42	43.94
Solyc02g070350.2.1	Tomato	nucleus, unclear	60.42	43.94
Solyc02g070340.2.1	Tomato	mitochondrion	60.42	43.94
Solyc02g070330.2.1	Tomato	mitochondrion	60.42	43.94
Solyc02g070320.2.1	Tomato	nucleus, unclear	60.42	43.94
PGSC0003DMT400054543	Potato	mitochondrion	60.42	43.94
KXG32490	Sorghum	cytosol	31.77	43.88
Os02t0105900-01	Rice	nucleus	60.42	43.77
Os01t0358400-01	Rice	nucleus, plasma membrane	60.42	43.77
Bra005923.1-P	Field mustard	cytosol	62.5	43.01
Os05t0368300-01	Rice	nucleus	58.85	42.97
GSMUA_Achr3P23970_001	Banana	cytosol	64.06	40.46
Solyc04g016350.1.1	Tomato	nucleus, unclear	52.08	40.0
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	63.54	39.61
GSMUA_Achr2P01640_001	Banana	cytosol	64.06	39.55
Bra020369.1-P	Field mustard	cytosol	61.98	39.53
TraesCS1A01G232700.1	Wheat	cytosol	50.52	38.49
Bra033109.1-P	Field mustard	cytosol	18.75	30.77
Bra005118.1-P	Field mustard	cytosol	17.71	27.87

Protein Annotations

Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	MapMan:35.1	InterPro:40S_S4_C	UniProt:A0A0R0FEX1
EMBL:ACUP02010490	EnsemblPlantsGene:GLYMA_17G181300	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	EnsemblPlants:KRH04718	ProteinID:KRH04718	ProteinID:KRH04718.1	PFAM:PD002667	PFAM:PF00467
PFAM:PF00900	PFAM:PF16121	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	SMART:SM00739	UniParc:UPI0006EDB499	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:21413676..21416860

Molecular Weight (calculated)

21737.9 Da

IEP (calculated)

11.243

GRAVY (calculated)

-0.344

Length

192 amino acids

Sequence
(BLAST)

001: MREAQTIIQG KCPIRVKITA IIKNAVSIPK TNENFRLLYD TKGRFRLHSI RDDEAKFKLC KVRSVQFGPK GIPYLNTYDG RTSITRTLSS GLMTLLSWIW
101: RKTRLSIFIK FDVGNVVMVT GGRNRGRVGV IKNREKHKGS FHVQDATGHE FATCMGNVFT IGKGTKPWIS LPKGKGIKLV YLDARKLKDT QP

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.