Factsheet for PGSC0003DMT400052955

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91447	Canola	cytosol, mitochondrion	22.04	83.67
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	34.95	72.22
Solyc06g007360.2.1	Tomato	plastid	89.25	62.88
VIT_13s0067g01820.t01	Wine grape	cytosol	82.8	62.6
CDX91445	Canola	cytosol	53.76	61.73
GSMUA_Achr5P27000_001	Banana	cytosol	81.72	61.54
GSMUA_Achr11P...	Banana	cytosol	81.72	61.54
KRH76010	Soybean	endoplasmic reticulum	83.33	58.71
KRH65626	Soybean	nucleus	83.33	58.71
Bra028708.1-P	Field mustard	cytosol	82.26	58.4
PGSC0003DMT400054543	Potato	mitochondrion	82.8	58.33
KRH73264	Soybean	endoplasmic reticulum	82.8	58.33
KRH08064	Soybean	nucleus	82.26	57.95
AT2G17360.1	Thale cress	mitochondrion	81.18	57.85
KRH04718	Soybean	cytosol	59.68	57.81
AT5G58420.1	Thale cress	mitochondrion	81.18	57.63
AT5G07090.1	Thale cress	mitochondrion	81.18	57.63
KRH69777	Soybean	endoplasmic reticulum	81.72	57.58
KXG32490	Sorghum	cytosol	43.01	57.55
KRH14914	Soybean	nucleus	81.18	57.2
CDX70008	Canola	cytosol	82.26	56.88
KRH04720	Soybean	cytosol, endoplasmic reticulum	62.37	56.86
Bra005923.1-P	Field mustard	cytosol	82.8	55.2
CDY58877	Canola	cytosol	82.8	55.2
HORVU1Hr1G021720.1	Barley	cytosol	78.49	55.09
TraesCS1A01G092900.1	Wheat	golgi, nucleus	78.49	55.09
TraesCS1B01G120600.1	Wheat	cytosol	78.49	55.09
TraesCS1D01G101600.1	Wheat	cytosol	78.49	55.09
EER90550	Sorghum	cytosol	77.42	54.55
CDX81032	Canola	extracellular	81.72	54.48
CDY02821	Canola	cytosol	80.11	54.18
EES18108	Sorghum	cytosol	76.34	53.99
EES00734	Sorghum	cytosol	76.88	53.96
Os01t0358400-01	Rice	nucleus, plasma membrane	76.34	53.58
Os02t0105900-01	Rice	nucleus	75.81	53.21
CDX99006	Canola	extracellular	82.26	53.12
CDY60025	Canola	cytosol	81.18	52.98
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	80.11	52.84
CDY32986	Canola	cytosol	81.72	52.78
CDY14056	Canola	cytosol	82.26	52.58
Os05t0368300-01	Rice	nucleus	74.19	52.47
CDY57385	Canola	cytosol, plastid	82.26	51.34
CDY52257	Canola	cytosol, mitochondrion	11.29	51.22
CDY54450	Canola	cytosol	33.33	50.82
Bra005118.1-P	Field mustard	cytosol	33.33	50.82
GSMUA_Achr3P23970_001	Banana	cytosol	82.26	50.33
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	83.33	50.32
VIT_06s0004g07150.t01	Wine grape	cytosol	81.18	50.0
CDY05015	Canola	cytosol	81.72	49.84
TraesCS1A01G232700.1	Wheat	cytosol	67.2	49.6
CDY32700	Canola	extracellular	79.57	49.17
GSMUA_Achr2P01640_001	Banana	cytosol	81.72	48.87
Bra020369.1-P	Field mustard	cytosol	79.03	48.84
CDY69841	Canola	mitochondrion	80.65	48.23
CDY68858	Canola	cytosol	17.74	28.21
Bra033109.1-P	Field mustard	cytosol	17.74	28.21
Zm00001d010037_P001	Maize	mitochondrion	18.82	26.12
CDY04355	Canola	cytosol	25.27	23.98
Zm00001d050009_P001	Maize	plastid	10.22	19.39
VIT_00s0252g00080.t01	Wine grape	nucleus	10.75	18.35
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	6.99	7.93
Zm00001d010387_P001	Maize	plastid	6.99	7.18
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	3.23	7.06
Zm00001d049253_P001	Maize	extracellular	5.38	4.63

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	UniProt:M1BU65	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF16121
EnsemblPlantsGene:PGSC0003DMG400020548	PGSC:PGSC0003DMG400020548	EnsemblPlants:PGSC0003DMT400052955	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2
InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	SMART:SM00739	UniParc:UPI00029564A8	SEG:seg

Description

40S ribosomal protein S4 [Source:PGSC_GENE;Acc:PGSC0003DMG400020548]

Coordinates

chr6:-:2995932..2996614

Molecular Weight (calculated)

21131.7 Da

IEP (calculated)

10.418

GRAVY (calculated)

-0.460

Length

186 amino acids

Sequence
(BLAST)

001: MNNSIFLYTN VVSIPKTNEN FRLLYDTKGR FRLHSVRYEE SKFKLCKVRS VQIGQKGIPY MNTYDERTIR CPDPLIKAND TIKLDLESNK IVDFIKFDVG
101: NVVMVTGGRH RGRVGVIKDS EKHKCSFETL HIQDSQGHEF ATRLGNVFTL GKGTKPWVSL PKGKGIKLTI IEEARKRMAA QSATPA

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.