CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G58420.1	Thale cress	mitochondrion	84.9	96.56
CDX70008	Canola	cytosol	86.24	95.54
CDY32986	Canola	cytosol	91.95	95.14
CDX91445	Canola	cytosol	51.34	94.44
Solyc06g007360.2.1	Tomato	plastid	81.88	92.42
CDX81032	Canola	extracellular	85.57	91.4
CDY58877	Canola	cytosol	85.57	91.4
CDY02821	Canola	cytosol	84.23	91.27
CDY60025	Canola	cytosol	86.91	90.88
CDX99006	Canola	extracellular	87.58	90.62
PGSC0003DMT400054543	Potato	mitochondrion	79.53	89.77
Solyc02g070330.2.1	Tomato	mitochondrion	79.53	89.77
Solyc02g070360.2.1	Tomato	nucleus	79.53	89.77
Solyc02g070350.2.1	Tomato	nucleus, unclear	79.53	89.77
Solyc02g070340.2.1	Tomato	mitochondrion	79.53	89.77
Solyc02g070320.2.1	Tomato	nucleus, unclear	79.19	89.39
EER90550	Sorghum	cytosol	78.86	89.02
GSMUA_Achr11P...	Banana	cytosol	73.49	88.66
GSMUA_Achr5P27000_001	Banana	cytosol	73.49	88.66
CDY14056	Canola	cytosol	86.24	88.32
CDX91447	Canola	cytosol, mitochondrion	14.43	87.76
Solyc04g016350.1.1	Tomato	nucleus, unclear	73.49	87.6
TraesCS1A01G092900.1	Wheat	golgi, nucleus	77.85	87.55
TraesCS1B01G120600.1	Wheat	cytosol	77.85	87.55
Os01t0358400-01	Rice	nucleus, plasma membrane	77.85	87.55
HORVU1Hr1G021720.1	Barley	cytosol	77.85	87.55
TraesCS1D01G101600.1	Wheat	cytosol	77.85	87.55
EES00734	Sorghum	cytosol	77.85	87.55
Os02t0105900-01	Rice	nucleus	77.52	87.17
EES18108	Sorghum	cytosol	76.51	86.69
Os05t0368300-01	Rice	nucleus	75.5	85.55
CDY69841	Canola	mitochondrion	88.59	84.89
CDY32700	Canola	extracellular	85.57	84.72
CDY05015	Canola	cytosol	86.24	84.26
PGSC0003DMT400052955	Potato	cytosol	51.34	82.26
TraesCS1A01G232700.1	Wheat	cytosol	69.46	82.14
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	82.55	79.87
GSMUA_Achr3P23970_001	Banana	cytosol	81.21	79.61
GSMUA_Achr2P01640_001	Banana	cytosol	79.87	76.53
KXG32490	Sorghum	cytosol	33.56	71.94
CDY54450	Canola	cytosol	24.83	60.66
CDY52257	Canola	cytosol, mitochondrion	8.05	58.54
CDY68858	Canola	cytosol	15.44	39.32
CDY04355	Canola	cytosol	20.47	31.12
CDY00352	Canola	cytosol	7.05	16.15
CDY42359	Canola	cytosol	6.71	16.13
CDY71580	Canola	cytosol	6.04	15.25
CDY36197	Canola	cytosol	5.7	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078J414
UniProt:A0A078J414	EnsemblPlants:CDY57385	ProteinID:CDY57385	ProteinID:CDY57385.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00020927001
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739
UniParc:UPI0004EDC351	SEG:seg	:	:	:	:

Description

BnaCnng31910D40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:A0A078J414]

Coordinates

chrLK033571:+:8775..11385

Molecular Weight (calculated)

33629.1 Da

IEP (calculated)

10.634

GRAVY (calculated)

-0.442

Length

298 amino acids

Sequence
(BLAST)

001: MDCLLQATSS LSSFYSFSAY SGCSSSESEL RLQTPIMARG LKKHLKRLNA PKHWMLDKLG GAFAPKPSSG PHKSRECLPL VLIIRNRLKY ALTYREVISI
101: LMQRHIQVDG KVRTDKTYPA GFMDVVSIPK TNENFRLLYD TKGRFRLHSI RDEEAKFKLC KVRTIQVGQK GIPYLNTYDG RTIRYPDPLI KPNDTIKLDL
201: EENKIVDSIK FDVGNVVMVT GGRNRGRVGV IKNREKHKGS FETIHIQDST GHEFATRLGN VFTLGKGTKP WVSLPKGKGI KLTIIEEARK RLAGQQAA

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.