Factsheet for Solyc06g007360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070330.2.1	Tomato	mitochondrion	94.7	94.7
Solyc02g070340.2.1	Tomato	mitochondrion	94.7	94.7
Solyc02g070350.2.1	Tomato	nucleus, unclear	94.7	94.7
Solyc02g070360.2.1	Tomato	nucleus	94.7	94.7
Solyc02g070320.2.1	Tomato	nucleus, unclear	94.32	94.32
KRH65626	Soybean	nucleus	93.18	93.18
KRH76010	Soybean	endoplasmic reticulum	93.18	93.18
AT2G17360.1	Thale cress	mitochondrion	92.05	93.1
AT5G07090.1	Thale cress	mitochondrion	92.05	92.75
Bra028708.1-P	Field mustard	cytosol	92.05	92.75
AT5G58420.1	Thale cress	mitochondrion	92.05	92.75
KRH73264	Soybean	endoplasmic reticulum	92.42	92.42
KRH08064	Soybean	nucleus	92.05	92.05
Solyc04g016350.1.1	Tomato	nucleus, unclear	87.12	92.0
KRH69777	Soybean	endoplasmic reticulum	91.67	91.67
VIT_13s0067g01820.t01	Wine grape	cytosol	85.23	91.46
KRH14914	Soybean	nucleus	91.29	91.29
GSMUA_Achr11P...	Banana	cytosol	84.85	90.69
GSMUA_Achr5P27000_001	Banana	cytosol	84.85	90.69
CDX91445	Canola	cytosol	55.3	90.12
CDX70008	Canola	cytosol	91.29	89.59
PGSC0003DMT400052955	Potato	cytosol	62.88	89.25
EER90550	Sorghum	cytosol	89.02	89.02
TraesCS1D01G101600.1	Wheat	cytosol	88.64	88.3
TraesCS1B01G120600.1	Wheat	cytosol	88.64	88.3
HORVU1Hr1G021720.1	Barley	cytosol	88.64	88.3
TraesCS1A01G092900.1	Wheat	golgi, nucleus	88.64	88.3
EES00734	Sorghum	cytosol	88.26	87.92
Os01t0358400-01	Rice	nucleus, plasma membrane	88.26	87.92
EES18108	Sorghum	cytosol	87.5	87.83
Os02t0105900-01	Rice	nucleus	87.88	87.55
CDY58877	Canola	cytosol	91.67	86.74
Bra005923.1-P	Field mustard	cytosol	91.29	86.38
Os05t0368300-01	Rice	nucleus	85.98	86.31
CDY02821	Canola	cytosol	89.77	86.18
CDX81032	Canola	extracellular	90.91	86.02
CDX91447	Canola	cytosol, mitochondrion	15.91	85.71
CDY60025	Canola	cytosol	91.67	84.91
CDY32986	Canola	cytosol	92.05	84.38
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	89.77	84.04
CDX99006	Canola	extracellular	91.67	84.03
CDY14056	Canola	cytosol	92.05	83.51
VIT_00s0252g00080.t01	Wine grape	nucleus	34.09	82.57
CDY57385	Canola	cytosol, plastid	92.42	81.88
TraesCS1A01G232700.1	Wheat	cytosol	77.65	81.35
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	27.27	80.0
GSMUA_Achr3P23970_001	Banana	cytosol	92.05	79.93
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	92.8	79.55
VIT_06s0004g07150.t01	Wine grape	cytosol	90.91	79.47
CDY05015	Canola	cytosol	91.67	79.34
CDY32700	Canola	extracellular	89.02	78.07
Bra020369.1-P	Field mustard	cytosol	88.64	77.74
CDY69841	Canola	mitochondrion	91.29	77.49
GSMUA_Achr2P01640_001	Banana	cytosol	91.29	77.49
KXG32490	Sorghum	cytosol	39.77	75.54
Zm00001d050009_P001	Maize	plastid	23.48	63.27
KRH04718	Soybean	cytosol	45.45	62.5
KRH04720	Soybean	cytosol, endoplasmic reticulum	46.59	60.29
CDY54450	Canola	cytosol	27.27	59.02
Bra005118.1-P	Field mustard	cytosol	27.27	59.02
CDY52257	Canola	cytosol, mitochondrion	9.09	58.54
CDY68858	Canola	cytosol	17.8	40.17
Bra033109.1-P	Field mustard	cytosol	17.8	40.17
Zm00001d010037_P001	Maize	mitochondrion	17.05	33.58
CDY04355	Canola	cytosol	23.48	31.63
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.44	20.0
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.58	12.2
Zm00001d010387_P001	Maize	plastid	7.58	11.05
Zm00001d049253_P001	Maize	extracellular	5.3	6.48

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022627	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	UniProt:K4C3B9
InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479
PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581
PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	EnsemblPlantsGene:Solyc06g007360.2	EnsemblPlants:Solyc06g007360.2.1	UniParc:UPI0002766110
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:K4C3B9]

Coordinates

chr6:-:1393218..1395914

Molecular Weight (calculated)

29959.8 Da

IEP (calculated)

10.965

GRAVY (calculated)

-0.483

Length

264 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVIIMRN RLKYALTYRE VISILMQRQV MVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSVRDEESK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KLDLESNKIV DFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETLHI QDSQGHEFAT RLGNVFTLGK GTKPWVSLPK GKGIKLTIIE EARKRLAAQS ATPA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.