Factsheet for Solyc04g016350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070350.2.1	Tomato	nucleus, unclear	96.4	91.29
Solyc02g070340.2.1	Tomato	mitochondrion	96.4	91.29
Solyc02g070330.2.1	Tomato	mitochondrion	96.4	91.29
PGSC0003DMT400054543	Potato	mitochondrion	96.0	90.91
Solyc02g070320.2.1	Tomato	nucleus, unclear	96.0	90.91
Solyc02g070360.2.1	Tomato	nucleus	96.0	90.91
Solyc06g007360.2.1	Tomato	plastid	92.0	87.12
Bra028708.1-P	Field mustard	cytosol	87.6	83.59
AT2G17360.1	Thale cress	mitochondrion	87.2	83.52
KRH73264	Soybean	endoplasmic reticulum	88.0	83.33
KRH08064	Soybean	nucleus	87.6	82.95
KRH14914	Soybean	nucleus	87.6	82.95
KRH65626	Soybean	nucleus	87.6	82.95
KRH76010	Soybean	endoplasmic reticulum	87.6	82.95
AT5G07090.1	Thale cress	mitochondrion	86.8	82.82
AT5G58420.1	Thale cress	mitochondrion	86.8	82.82
KRH69777	Soybean	endoplasmic reticulum	87.2	82.58
VIT_13s0067g01820.t01	Wine grape	cytosol	80.4	81.71
EER90550	Sorghum	cytosol	85.6	81.06
GSMUA_Achr5P27000_001	Banana	cytosol	80.0	80.97
GSMUA_Achr11P...	Banana	cytosol	80.0	80.97
VIT_00s0252g00080.t01	Wine grape	nucleus	35.2	80.73
CDX70008	Canola	cytosol	86.8	80.67
EES18108	Sorghum	cytosol	84.8	80.61
Os01t0358400-01	Rice	nucleus, plasma membrane	84.8	80.0
EES00734	Sorghum	cytosol	84.8	80.0
Os02t0105900-01	Rice	nucleus	84.4	79.62
Os05t0368300-01	Rice	nucleus	83.6	79.47
TraesCS1D01G101600.1	Wheat	cytosol	84.0	79.25
TraesCS1A01G092900.1	Wheat	golgi, nucleus	84.0	79.25
TraesCS1B01G120600.1	Wheat	cytosol	84.0	79.25
HORVU1Hr1G021720.1	Barley	cytosol	84.0	79.25
CDY58877	Canola	cytosol	86.8	77.78
CDX91445	Canola	cytosol	50.4	77.78
CDX91447	Canola	cytosol, mitochondrion	15.2	77.55
Bra005923.1-P	Field mustard	cytosol	86.4	77.42
CDX81032	Canola	extracellular	86.4	77.42
CDY02821	Canola	cytosol	84.8	77.09
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	86.8	76.95
CDY60025	Canola	cytosol	86.8	76.14
CDY32986	Canola	cytosol	87.6	76.04
CDX99006	Canola	extracellular	87.2	75.69
CDY14056	Canola	cytosol	88.0	75.6
TraesCS1A01G232700.1	Wheat	cytosol	75.6	75.0
CDY57385	Canola	cytosol, plastid	87.6	73.49
GSMUA_Achr3P23970_001	Banana	cytosol	88.0	72.37
VIT_06s0004g07150.t01	Wine grape	cytosol	86.8	71.85
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	88.4	71.75
CDY05015	Canola	cytosol	87.2	71.48
KXG32490	Sorghum	cytosol	39.6	71.22
CDY32700	Canola	extracellular	84.8	70.43
Bra020369.1-P	Field mustard	cytosol	84.4	70.1
GSMUA_Achr2P01640_001	Banana	cytosol	86.4	69.45
CDY69841	Canola	mitochondrion	86.4	69.45
Zm00001d050009_P001	Maize	plastid	24.4	62.24
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	21.6	60.0
KRH04718	Soybean	cytosol	40.0	52.08
KRH04720	Soybean	cytosol, endoplasmic reticulum	40.8	50.0
CDY54450	Canola	cytosol	23.6	48.36
Bra005118.1-P	Field mustard	cytosol	23.6	48.36
CDY52257	Canola	cytosol, mitochondrion	5.6	34.15
Bra033109.1-P	Field mustard	cytosol	14.8	31.62
CDY68858	Canola	cytosol	14.8	31.62
CDY04355	Canola	cytosol	20.0	25.51
Zm00001d010037_P001	Maize	mitochondrion	12.4	23.13
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.0	17.65
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	8.0	12.2
Zm00001d010387_P001	Maize	plastid	7.6	10.5
Zm00001d049253_P001	Maize	extracellular	5.2	6.02

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022627	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	UniProt:K4BQD5
HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121
PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2
InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd
EnsemblPlantsGene:Solyc04g016350.1	EnsemblPlants:Solyc04g016350.1.1	UniParc:UPI0002767164	:	:	:

Description

40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:K4BQD5]

Coordinates

chr4:-:7142894..7143686

Molecular Weight (calculated)

28356.1 Da

IEP (calculated)

10.844

GRAVY (calculated)

-0.321

Length

250 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSKE CLPLVIILRN RLKYALTYRE VISILMQRQV MVDGKVRTDK TYPAGFMDVV TIPKTNECFR
101: LLYDTKGQFR LHSLRDEKAK FKLCKVRLVQ FGQKGIPYLN TYEGRTIRYP NPLIKANDTI KLDLDSNKIV DFIKFDVGNV VMVTGGRNRG FETVHIQDSL
201: GHEFATRLGN VFTLGKGSKP WVSLPKGKGI KLSIIEEARK RMVAQSATTI

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.