Factsheet for VIT_08s0058g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01820.t01	Wine grape	cytosol	82.27	94.31
GSMUA_Achr5P27000_001	Banana	cytosol	79.43	90.69
GSMUA_Achr11P...	Banana	cytosol	79.43	90.69
AT5G07090.1	Thale cress	mitochondrion	83.69	90.08
AT5G58420.1	Thale cress	mitochondrion	83.69	90.08
AT2G17360.1	Thale cress	mitochondrion	83.33	90.04
Solyc06g007360.2.1	Tomato	plastid	84.04	89.77
Bra028708.1-P	Field mustard	cytosol	83.33	89.69
EER90550	Sorghum	cytosol	82.98	88.64
Solyc02g070350.2.1	Tomato	nucleus, unclear	82.98	88.64
Solyc02g070340.2.1	Tomato	mitochondrion	82.98	88.64
Solyc02g070330.2.1	Tomato	mitochondrion	82.98	88.64
EES00734	Sorghum	cytosol	82.98	88.3
Solyc02g070360.2.1	Tomato	nucleus	82.62	88.26
Solyc02g070320.2.1	Tomato	nucleus, unclear	82.62	88.26
PGSC0003DMT400054543	Potato	mitochondrion	82.62	88.26
EES18108	Sorghum	cytosol	82.27	88.21
Os01t0358400-01	Rice	nucleus, plasma membrane	82.27	87.55
TraesCS1A01G092900.1	Wheat	golgi, nucleus	81.91	87.17
Os02t0105900-01	Rice	nucleus	81.91	87.17
HORVU1Hr1G021720.1	Barley	cytosol	81.91	87.17
TraesCS1B01G120600.1	Wheat	cytosol	81.91	87.17
TraesCS1D01G101600.1	Wheat	cytosol	81.91	87.17
VIT_00s0252g00080.t01	Wine grape	nucleus	33.69	87.16
Os05t0368300-01	Rice	nucleus	81.21	87.07
Solyc04g016350.1.1	Tomato	nucleus, unclear	76.95	86.8
VIT_06s0004g07150.t01	Wine grape	cytosol	89.72	83.77
Bra005923.1-P	Field mustard	cytosol	82.62	83.51
TraesCS1A01G232700.1	Wheat	cytosol	72.34	80.95
PGSC0003DMT400052955	Potato	cytosol	52.84	80.11
GSMUA_Achr3P23970_001	Banana	cytosol	85.82	79.61
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	85.82	78.57
GSMUA_Achr2P01640_001	Banana	cytosol	85.82	77.81
Bra020369.1-P	Field mustard	cytosol	81.91	76.74
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	24.47	76.67
KXG32490	Sorghum	cytosol	36.52	74.1
Bra005118.1-P	Field mustard	cytosol	24.11	55.74
Bra033109.1-P	Field mustard	cytosol	15.96	38.46
Zm00001d010037_P001	Maize	mitochondrion	15.25	32.09
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	5.32	17.65
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.09	12.2
Zm00001d010387_P001	Maize	plastid	6.38	9.94
Zm00001d049253_P001	Maize	extracellular	6.03	7.87

Protein Annotations

EntrezGene:100262686	wikigene:100262686	MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40
InterPro:40S_S4_C	ProteinID:CCB44821	ProteinID:CCB44821.1	UniProt:F6GXU1	EMBL:FN594967	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0022627	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW
EntrezGene:LOC100262686	wikigene:LOC100262686	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889
PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739	TIGR:TC52900
UniParc:UPI000210A90D	ArrayExpress:VIT_08s0058g00390	EnsemblPlantsGene:VIT_08s0058g00390	EnsemblPlants:VIT_08s0058g00390.t01	unigene:Vvi.181	RefSeq:XP_002268192
RefSeq:XP_002268192.1	SEG:seg	:	:	:	:

Description

40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:F6GXU1]

Coordinates

chr8:+:9337419..9340280

Molecular Weight (calculated)

31729.1 Da

IEP (calculated)

10.861

GRAVY (calculated)

-0.333

Length

282 amino acids

Sequence
(BLAST)

001: MGIGLLIRSG WHEPFSCLLA RGLKKHLKRL NAPKHWMLDK LGGAFAPKPS SGPHKSRECL PLILILRNRL KYALTYREVI AILMQRHVLV DGKVRTDKTY
101: PSGFMDVVSI PKTNENFRLL YDTKGRFRLH SIRDEEAKFK LCKVKGVQFG QKGIPYLNTY DGRTIRYPDP LIKANDTVKL DLESNKIVDF IKFDVGNVVM
201: VTGGRNRGRV GVIKSREKHK GTFETIHVQD ATGHEFATRL GNVFTIGKGT KPWVTLPKGK GIKLSIIEEA KKRLAAQASA TA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.