Factsheet for AT2G17360.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G07090.1	Thale cress	mitochondrion	99.23	98.86
AT5G58420.1	Thale cress	mitochondrion	98.85	98.47
Solyc06g007360.2.1	Tomato	plastid	93.1	92.05
KRH73264	Soybean	endoplasmic reticulum	92.72	91.67
KRH69777	Soybean	endoplasmic reticulum	92.34	91.29
KRH14914	Soybean	nucleus	92.34	91.29
KRH08064	Soybean	nucleus	92.34	91.29
VIT_13s0067g01820.t01	Wine grape	cytosol	85.44	90.65
KRH65626	Soybean	nucleus	91.57	90.53
KRH76010	Soybean	endoplasmic reticulum	91.57	90.53
Solyc02g070360.2.1	Tomato	nucleus	90.42	89.39
Solyc02g070350.2.1	Tomato	nucleus, unclear	90.42	89.39
Solyc02g070340.2.1	Tomato	mitochondrion	90.42	89.39
Solyc02g070330.2.1	Tomato	mitochondrion	90.42	89.39
GSMUA_Achr5P27000_001	Banana	cytosol	84.29	89.07
GSMUA_Achr11P...	Banana	cytosol	84.29	89.07
EER90550	Sorghum	cytosol	90.04	89.02
Solyc02g070320.2.1	Tomato	nucleus, unclear	90.04	89.02
PGSC0003DMT400054543	Potato	mitochondrion	90.04	89.02
Os01t0358400-01	Rice	nucleus, plasma membrane	89.66	88.3
Os02t0105900-01	Rice	nucleus	89.27	87.92
TraesCS1A01G092900.1	Wheat	golgi, nucleus	88.89	87.55
EES00734	Sorghum	cytosol	88.89	87.55
TraesCS1B01G120600.1	Wheat	cytosol	88.89	87.55
TraesCS1D01G101600.1	Wheat	cytosol	88.89	87.55
HORVU1Hr1G021720.1	Barley	cytosol	88.89	87.55
Solyc04g016350.1.1	Tomato	nucleus, unclear	83.52	87.2
EES18108	Sorghum	cytosol	87.36	86.69
Os05t0368300-01	Rice	nucleus	86.97	86.31
VIT_00s0252g00080.t01	Wine grape	nucleus	34.87	83.49
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	90.04	83.33
TraesCS1A01G232700.1	Wheat	cytosol	78.93	81.75
PGSC0003DMT400052955	Potato	cytosol	57.85	81.18
GSMUA_Achr3P23970_001	Banana	cytosol	92.34	79.28
VIT_06s0004g07150.t01	Wine grape	cytosol	91.19	78.81
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	92.72	78.57
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	26.44	76.67
GSMUA_Achr2P01640_001	Banana	cytosol	90.42	75.88
KXG32490	Sorghum	cytosol	38.7	72.66
Zm00001d050009_P001	Maize	plastid	24.14	64.29
KRH04718	Soybean	cytosol	46.74	63.54
KRH04720	Soybean	cytosol, endoplasmic reticulum	47.89	61.27
Zm00001d010037_P001	Maize	mitochondrion	17.24	33.58
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	5.75	17.65
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.66	12.2
Zm00001d010387_P001	Maize	plastid	7.28	10.5
Zm00001d049253_P001	Maize	extracellular	5.36	6.48

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EntrezGene:816243
ProteinID:AEC06616.1	EMBL:AF370469	ArrayExpress:AT2G17360	EnsemblPlantsGene:AT2G17360	RefSeq:AT2G17360	TAIR:AT2G17360
RefSeq:AT2G17360-TAIR-G	EnsemblPlants:AT2G17360.1	TAIR:AT2G17360.1	EMBL:AY035131	EMBL:AY062983	EMBL:AY064625
EMBL:AY084230	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005829	GO:GO:0005840	GO:GO:0005886	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0019843	GO:GO:0022627	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722
InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	RefSeq:NP_565414.1	PFAM:PD002667	PFAM:PF00467
PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	PO:PO:0000005
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0006339	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00528
PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	UniProt:Q93VH9	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739
UniParc:UPI000005EA5F	SEG:seg	:	:	:	:

Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]

Coordinates

chr2:+:7546440..7548406

Molecular Weight (calculated)

29804.6 Da

IEP (calculated)

10.845

GRAVY (calculated)

-0.526

Length

261 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.