Factsheet for Os01t0358400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

plastid 2
nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0105900-01	Rice	nucleus	99.25	99.25
EES00734	Sorghum	cytosol	98.49	98.49
Os05t0368300-01	Rice	nucleus	90.94	91.64
KRH69777	Soybean	endoplasmic reticulum	90.57	90.91
KRH08064	Soybean	nucleus	90.57	90.91
GSMUA_Achr11P...	Banana	cytosol	84.53	90.69
KRH73264	Soybean	endoplasmic reticulum	90.19	90.53
GSMUA_Achr5P27000_001	Banana	cytosol	84.15	90.28
KRH76010	Soybean	endoplasmic reticulum	89.43	89.77
KRH65626	Soybean	nucleus	89.43	89.77
KRH14914	Soybean	nucleus	89.43	89.77
AT5G07090.1	Thale cress	mitochondrion	88.68	89.69
AT5G58420.1	Thale cress	mitochondrion	88.68	89.69
AT2G17360.1	Thale cress	mitochondrion	88.3	89.66
Solyc06g007360.2.1	Tomato	plastid	87.92	88.26
Bra028708.1-P	Field mustard	cytosol	87.17	88.17
VIT_13s0067g01820.t01	Wine grape	cytosol	81.51	87.8
Solyc02g070360.2.1	Tomato	nucleus	87.17	87.5
Solyc02g070330.2.1	Tomato	mitochondrion	86.79	87.12
Solyc02g070340.2.1	Tomato	mitochondrion	86.79	87.12
Solyc02g070350.2.1	Tomato	nucleus, unclear	86.79	87.12
Solyc02g070320.2.1	Tomato	nucleus, unclear	86.42	86.74
PGSC0003DMT400054543	Potato	mitochondrion	86.42	86.74
CDX91445	Canola	cytosol	52.08	85.19
CDX70008	Canola	cytosol	86.42	85.13
Solyc04g016350.1.1	Tomato	nucleus, unclear	80.0	84.8
VIT_00s0252g00080.t01	Wine grape	nucleus	33.96	82.57
CDY02821	Canola	cytosol	85.66	82.55
CDY58877	Canola	cytosol	86.79	82.44
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	87.55	82.27
Bra005923.1-P	Field mustard	cytosol	86.42	82.08
CDX81032	Canola	extracellular	86.04	81.72
CDY60025	Canola	cytosol	87.55	81.4
CDY32986	Canola	cytosol	87.17	80.21
CDX99006	Canola	extracellular	86.79	79.86
CDY14056	Canola	cytosol	87.17	79.38
GSMUA_Achr3P23970_001	Banana	cytosol	90.94	79.28
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	91.32	78.57
CDY57385	Canola	cytosol, plastid	87.55	77.85
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	26.42	77.78
CDX91447	Canola	cytosol, mitochondrion	14.34	77.55
VIT_06s0004g07150.t01	Wine grape	cytosol	88.3	77.48
GSMUA_Achr2P01640_001	Banana	cytosol	89.81	76.53
PGSC0003DMT400052955	Potato	cytosol	53.58	76.34
CDY05015	Canola	cytosol	86.79	75.41
CDY32700	Canola	extracellular	84.91	74.75
Bra020369.1-P	Field mustard	cytosol	84.53	74.42
CDY69841	Canola	mitochondrion	87.17	74.28
KRH04718	Soybean	cytosol	43.77	60.42
KRH04720	Soybean	cytosol, endoplasmic reticulum	44.91	58.33
CDY52257	Canola	cytosol, mitochondrion	8.68	56.1
Bra005118.1-P	Field mustard	cytosol	25.28	54.92
CDY54450	Canola	cytosol	25.28	54.92
Bra033109.1-P	Field mustard	cytosol	17.36	39.32
CDY68858	Canola	cytosol	17.36	39.32
CDY04355	Canola	cytosol	22.64	30.61
CDY42359	Canola	cytosol	8.3	17.74
CDY71580	Canola	cytosol	7.55	16.95
CDY00352	Canola	cytosol	7.55	15.38
CDY36197	Canola	cytosol	6.04	12.4

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EntrezGene:4326022
EMBL:AK061826	ProteinID:BAD52963.1	ProteinID:BAF04929.1	ProteinID:BAS72082.1	ncoils:Coil	ProteinID:EAZ11863.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0019843	GO:GO:0022627	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW
HAMAP:MF_00485	EnsemblPlantsGene:Os01g0358400	EnsemblPlants:Os01t0358400-01	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889
PANTHER:PTHR11581	PANTHER:PTHR11581:SF10	UniProt:Q5ZBX1	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N
InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739
UniParc:UPI0000446BF5	RefSeq:XP_015622456.1	SEG:seg	:	:	:

Description

Similar to 40S ribosomal protein S4. (Os01t0358400-01)

Coordinates

chr1:+:14513332..14515250

Molecular Weight (calculated)

29809.6 Da

IEP (calculated)

10.798

GRAVY (calculated)

-0.417

Length

265 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILIIRN RLKYALTYRE VISILMQRHV LVDGKVRTDK TYPAGFMDVI SIPKTGENYR
101: LLYDTKGRFR LQSVKDEDAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KIDLETNKIV DFIKFDVGNV VMVTGGRNTG RVGVIKNREK
201: HKGSFETIHV EDALGHAFAT RLGNVFTIGK GNKPWVSLPK GKGIKLSIIE EQRKRDAAAQ AAANA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.