Factsheet for Bra028708.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G07090.1	Thale cress	mitochondrion	96.95	96.95
Solyc06g007360.2.1	Tomato	plastid	92.75	92.05
Bra005923.1-P	Field mustard	cytosol	97.71	91.76
KRH73264	Soybean	endoplasmic reticulum	91.6	90.91
KRH14914	Soybean	nucleus	91.22	90.53
KRH08064	Soybean	nucleus	91.22	90.53
KRH69777	Soybean	endoplasmic reticulum	90.84	90.15
VIT_13s0067g01820.t01	Wine grape	cytosol	84.35	89.84
KRH76010	Soybean	endoplasmic reticulum	90.46	89.77
KRH65626	Soybean	nucleus	90.46	89.77
CDY14056	Canola	cytosol	99.62	89.69
Solyc02g070330.2.1	Tomato	mitochondrion	90.08	89.39
Solyc02g070360.2.1	Tomato	nucleus	90.08	89.39
Solyc02g070350.2.1	Tomato	nucleus, unclear	90.08	89.39
Solyc02g070340.2.1	Tomato	mitochondrion	90.08	89.39
GSMUA_Achr11P...	Banana	cytosol	83.97	89.07
GSMUA_Achr5P27000_001	Banana	cytosol	83.97	89.07
PGSC0003DMT400054543	Potato	mitochondrion	89.69	89.02
Solyc02g070320.2.1	Tomato	nucleus, unclear	89.69	89.02
EER90550	Sorghum	cytosol	89.31	88.64
Solyc04g016350.1.1	Tomato	nucleus, unclear	83.59	87.6
TraesCS1A01G092900.1	Wheat	golgi, nucleus	88.17	87.17
TraesCS1B01G120600.1	Wheat	cytosol	88.17	87.17
TraesCS1D01G101600.1	Wheat	cytosol	88.17	87.17
EES00734	Sorghum	cytosol	88.17	87.17
Os01t0358400-01	Rice	nucleus, plasma membrane	88.17	87.17
HORVU1Hr1G021720.1	Barley	cytosol	88.17	87.17
Os02t0105900-01	Rice	nucleus	87.79	86.79
EES18108	Sorghum	cytosol	86.26	85.93
CDY05015	Canola	cytosol	99.62	85.57
Os05t0368300-01	Rice	nucleus	85.11	84.79
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	89.69	83.33
Bra020369.1-P	Field mustard	cytosol	94.66	82.39
PGSC0003DMT400052955	Potato	cytosol	58.4	82.26
VIT_00s0252g00080.t01	Wine grape	nucleus	33.97	81.65
TraesCS1A01G232700.1	Wheat	cytosol	78.24	81.35
GSMUA_Achr3P23970_001	Banana	cytosol	91.98	79.28
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	92.75	78.9
VIT_06s0004g07150.t01	Wine grape	cytosol	90.08	78.15
GSMUA_Achr2P01640_001	Banana	cytosol	90.08	75.88
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	25.95	75.56
KXG32490	Sorghum	cytosol	38.55	72.66
Zm00001d050009_P001	Maize	plastid	24.05	64.29
Bra005118.1-P	Field mustard	cytosol	29.77	63.93
KRH04718	Soybean	cytosol	46.56	63.54
KRH04720	Soybean	cytosol, endoplasmic reticulum	48.47	62.25
Bra033109.1-P	Field mustard	cytosol	18.32	41.03
Zm00001d010037_P001	Maize	mitochondrion	17.18	33.58
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.11	18.82
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.25	11.59
Zm00001d010387_P001	Maize	plastid	6.87	9.94
Zm00001d049253_P001	Maize	extracellular	5.34	6.48

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EnsemblPlantsGene:Bra028708
EnsemblPlants:Bra028708.1	EnsemblPlants:Bra028708.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	UniProt:M4EIU3	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889
PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI00025431EA	SEG:seg

Description

AT2G17360 (E=7e-136) | 40S ribosomal protein S4 (RPS4A)

Coordinates

chrA02:+:2440671..2442662

Molecular Weight (calculated)

29857.6 Da

IEP (calculated)

10.838

GRAVY (calculated)

-0.524

Length

262 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWDL DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN KLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIRDEEAK FKLCKVRTIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVFTLGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ AA

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.