CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08064	Soybean	nucleus	98.86	98.86
KRH73264	Soybean	endoplasmic reticulum	98.48	98.48
KRH69777	Soybean	endoplasmic reticulum	98.48	98.48
KRH76010	Soybean	endoplasmic reticulum	95.08	95.08
KRH65626	Soybean	nucleus	95.08	95.08
GSMUA_Achr5P27000_001	Banana	cytosol	87.12	93.12
GSMUA_Achr11P...	Banana	cytosol	87.12	93.12
AT2G17360.1	Thale cress	mitochondrion	91.29	92.34
AT5G07090.1	Thale cress	mitochondrion	91.29	91.98
AT5G58420.1	Thale cress	mitochondrion	90.91	91.6
EER90550	Sorghum	cytosol	91.29	91.29
Solyc06g007360.2.1	Tomato	plastid	91.29	91.29
Bra028708.1-P	Field mustard	cytosol	90.53	91.22
Solyc02g070350.2.1	Tomato	nucleus, unclear	90.53	90.53
Solyc02g070340.2.1	Tomato	mitochondrion	90.53	90.53
Solyc02g070330.2.1	Tomato	mitochondrion	90.53	90.53
EES00734	Sorghum	cytosol	90.53	90.19
Solyc02g070360.2.1	Tomato	nucleus	90.15	90.15
Solyc02g070320.2.1	Tomato	nucleus, unclear	90.15	90.15
PGSC0003DMT400054543	Potato	mitochondrion	90.15	90.15
EES18108	Sorghum	cytosol	89.39	89.73
Os01t0358400-01	Rice	nucleus, plasma membrane	89.77	89.43
Os02t0105900-01	Rice	nucleus	89.39	89.06
Os05t0368300-01	Rice	nucleus	88.26	88.59
HORVU1Hr1G021720.1	Barley	cytosol	88.64	88.3
TraesCS1D01G101600.1	Wheat	cytosol	88.64	88.3
TraesCS1B01G120600.1	Wheat	cytosol	88.64	88.3
TraesCS1A01G092900.1	Wheat	golgi, nucleus	88.64	88.3
Solyc04g016350.1.1	Tomato	nucleus, unclear	82.95	87.6
Bra005923.1-P	Field mustard	cytosol	89.02	84.23
TraesCS1A01G232700.1	Wheat	cytosol	78.41	82.14
GSMUA_Achr3P23970_001	Banana	cytosol	93.56	81.25
PGSC0003DMT400052955	Potato	cytosol	57.2	81.18
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	92.8	79.55
GSMUA_Achr2P01640_001	Banana	cytosol	93.18	79.1
Bra020369.1-P	Field mustard	cytosol	88.26	77.41
KXG32490	Sorghum	cytosol	39.39	74.82
KRH04718	Soybean	cytosol	48.86	67.19
KRH04720	Soybean	cytosol, endoplasmic reticulum	51.52	66.67
Bra005118.1-P	Field mustard	cytosol	26.52	57.38
Bra033109.1-P	Field mustard	cytosol	17.8	40.17

Protein Annotations

EntrezGene:100811336	MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C
UniProt:A0A0R4J581	EMBL:ACUP02008542	EnsemblPlantsGene:GLYMA_14G056900	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722
InterPro:IPR038237	InterPro:KOW	EnsemblPlants:KRH14914	ProteinID:KRH14914	ProteinID:KRH14914.1	HAMAP:MF_00485
PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121
PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2
InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd
SMART:SM00363	SMART:SM00739	UniParc:UPI00019AA891	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr14:-:4549808..4552551

Molecular Weight (calculated)

29976.9 Da

IEP (calculated)

10.942

GRAVY (calculated)

-0.447

Length

264 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLILILRN RLKYALTYRE VIAILMQRHV LVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIRDDEAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIRANDTV KLDLEENKIV DFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHV QDATGHEFAT RMGNVFTIGK GTKPWISLPK GKGIKLSIIE EARKRIAAQQ ATTA

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.