Factsheet for Bra020369.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
nucleus 1
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32700	Canola	extracellular	99.67	99.67
Bra028708.1-P	Field mustard	cytosol	82.39	94.66
AT5G58420.1	Thale cress	mitochondrion	81.06	93.13
Solyc06g007360.2.1	Tomato	plastid	77.74	88.64
VIT_13s0067g01820.t01	Wine grape	cytosol	72.43	88.62
GSMUA_Achr5P27000_001	Banana	cytosol	72.43	88.26
KRH76010	Soybean	endoplasmic reticulum	77.41	88.26
KRH69777	Soybean	endoplasmic reticulum	77.41	88.26
KRH65626	Soybean	nucleus	77.41	88.26
KRH14914	Soybean	nucleus	77.41	88.26
KRH08064	Soybean	nucleus	77.41	88.26
KRH73264	Soybean	endoplasmic reticulum	77.08	87.88
GSMUA_Achr11P...	Banana	cytosol	72.09	87.85
Bra005923.1-P	Field mustard	cytosol	81.06	87.46
Solyc02g070360.2.1	Tomato	nucleus	75.75	86.36
Solyc02g070350.2.1	Tomato	nucleus, unclear	75.75	86.36
Solyc02g070340.2.1	Tomato	mitochondrion	75.75	86.36
Solyc02g070330.2.1	Tomato	mitochondrion	75.75	86.36
Solyc02g070320.2.1	Tomato	nucleus, unclear	75.42	85.98
PGSC0003DMT400054543	Potato	mitochondrion	75.42	85.98
Os01t0358400-01	Rice	nucleus, plasma membrane	74.42	84.53
EER90550	Sorghum	cytosol	74.09	84.47
Solyc04g016350.1.1	Tomato	nucleus, unclear	70.1	84.4
TraesCS1B01G120600.1	Wheat	cytosol	74.09	84.15
Os02t0105900-01	Rice	nucleus	74.09	84.15
TraesCS1D01G101600.1	Wheat	cytosol	74.09	84.15
HORVU1Hr1G021720.1	Barley	cytosol	74.09	84.15
TraesCS1A01G092900.1	Wheat	golgi, nucleus	74.09	84.15
EES00734	Sorghum	cytosol	73.75	83.77
Os05t0368300-01	Rice	nucleus	72.76	83.27
EES18108	Sorghum	cytosol	72.09	82.51
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	76.74	81.91
VIT_00s0252g00080.t01	Wine grape	nucleus	28.9	79.82
PGSC0003DMT400052955	Potato	cytosol	48.84	79.03
TraesCS1A01G232700.1	Wheat	cytosol	66.11	78.97
GSMUA_Achr3P23970_001	Banana	cytosol	79.73	78.95
VIT_06s0004g07150.t01	Wine grape	cytosol	78.41	78.15
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	79.4	77.6
GSMUA_Achr2P01640_001	Banana	cytosol	78.41	75.88
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	21.59	72.22
KXG32490	Sorghum	cytosol	32.23	69.78
Zm00001d050009_P001	Maize	plastid	20.27	62.24
KRH04718	Soybean	cytosol	39.53	61.98
Bra005118.1-P	Field mustard	cytosol	24.92	61.48
KRH04720	Soybean	cytosol, endoplasmic reticulum	40.86	60.29
Bra033109.1-P	Field mustard	cytosol	15.61	40.17
Zm00001d010037_P001	Maize	mitochondrion	14.95	33.58
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	5.32	18.82
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	6.31	11.59
Zm00001d010387_P001	Maize	plastid	6.31	10.5
Zm00001d049253_P001	Maize	extracellular	5.32	7.41

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	EnsemblPlantsGene:Bra020369
EnsemblPlants:Bra020369.1	EnsemblPlants:Bra020369.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0019843
GO:GO:0022626	GO:GO:0022627	GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	UniProt:M4DV26	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900
PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889
PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS
InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI000254305C	SEG:seg

Description

AT2G17360 (E=1e-129) | 40S ribosomal protein S4 (RPS4A)

Coordinates

chrA02:-:6436951..6439866

Molecular Weight (calculated)

33929.5 Da

IEP (calculated)

10.875

GRAVY (calculated)

-0.505

Length

301 amino acids

Sequence
(BLAST)

001: MLASNGRSID VNSQKKSLTS RSELKRDKSS SGSSELRFQT PTMARGLKKH LKRLNAPTIW GLDKLGGAFA PKPSSGPHKS RECLPLVLII RNKLKYALTY
101: REVIAILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEC FRLLYDTKGR FRLHSIKDEE AKFKLCKVRT ISFGQKGIPY LNTYDGRPIR YPDPLIKPND
201: TIKLDLEENK VVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDATGHEF ATRLGNVFTL GKGTKPWVSL PKGKGIKLTI IEEARKRLAA
301: Q

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.