CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020369.1-P	Field mustard	cytosol	99.67	99.67
CDY02821	Canola	cytosol	86.71	94.91
AT5G58420.1	Thale cress	mitochondrion	81.4	93.51
CDX70008	Canola	cytosol	81.4	91.08
CDX91445	Canola	cytosol	48.84	90.74
Solyc06g007360.2.1	Tomato	plastid	78.07	89.02
GSMUA_Achr5P27000_001	Banana	cytosol	72.76	88.66
GSMUA_Achr11P...	Banana	cytosol	72.43	88.26
CDX81032	Canola	extracellular	81.73	88.17
CDY58877	Canola	cytosol	81.73	88.17
CDY32986	Canola	cytosol	83.39	87.15
Solyc02g070360.2.1	Tomato	nucleus	76.08	86.74
Solyc02g070350.2.1	Tomato	nucleus, unclear	76.08	86.74
Solyc02g070340.2.1	Tomato	mitochondrion	76.08	86.74
Solyc02g070330.2.1	Tomato	mitochondrion	76.08	86.74
CDY60025	Canola	cytosol	82.06	86.67
PGSC0003DMT400054543	Potato	mitochondrion	75.75	86.36
Solyc02g070320.2.1	Tomato	nucleus, unclear	75.75	86.36
CDY14056	Canola	cytosol	83.06	85.91
CDX99006	Canola	extracellular	82.06	85.76
CDY57385	Canola	cytosol, plastid	84.72	85.57
Os01t0358400-01	Rice	nucleus, plasma membrane	74.75	84.91
EER90550	Sorghum	cytosol	74.42	84.85
Solyc04g016350.1.1	Tomato	nucleus, unclear	70.43	84.8
TraesCS1A01G092900.1	Wheat	golgi, nucleus	74.42	84.53
Os02t0105900-01	Rice	nucleus	74.42	84.53
TraesCS1B01G120600.1	Wheat	cytosol	74.42	84.53
HORVU1Hr1G021720.1	Barley	cytosol	74.42	84.53
TraesCS1D01G101600.1	Wheat	cytosol	74.42	84.53
EES00734	Sorghum	cytosol	74.09	84.15
CDX91447	Canola	cytosol, mitochondrion	13.62	83.67
Os05t0368300-01	Rice	nucleus	73.09	83.65
EES18108	Sorghum	cytosol	72.43	82.89
CDY05015	Canola	cytosol	83.06	81.97
CDY69841	Canola	mitochondrion	83.39	80.71
PGSC0003DMT400052955	Potato	cytosol	49.17	79.57
TraesCS1A01G232700.1	Wheat	cytosol	66.45	79.37
GSMUA_Achr3P23970_001	Banana	cytosol	80.07	79.28
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	79.73	77.92
GSMUA_Achr2P01640_001	Banana	cytosol	78.74	76.21
KXG32490	Sorghum	cytosol	32.56	70.5
CDY54450	Canola	cytosol	24.58	60.66
CDY52257	Canola	cytosol, mitochondrion	7.97	58.54
CDY68858	Canola	cytosol	15.95	41.03
CDY04355	Canola	cytosol	20.93	32.14
CDY42359	Canola	cytosol	7.31	17.74
CDY71580	Canola	cytosol	6.64	16.95
CDY00352	Canola	cytosol	6.98	16.15
CDY36197	Canola	cytosol	5.32	12.4

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078H257
UniProt:A0A078H257	EnsemblPlants:CDY32700	ProteinID:CDY32700	ProteinID:CDY32700.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00052750001
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739
UniParc:UPI0004EE5163	SEG:seg	:	:	:	:

Description

BnaA02g07620D40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:A0A078H257]

Coordinates

chrLK032298:-:261547..264554

Molecular Weight (calculated)

33933.5 Da

IEP (calculated)

10.875

GRAVY (calculated)

-0.502

Length

301 amino acids

Sequence
(BLAST)

001: MLASNGRSID VNSQKKSLTS RSELKRDKSS SGSSELRFQT PTMARGLKKH LKRLNAPTIW GLDKLGGAFA PKPSSGPHKS RECLPLVLII RNKLKYALTY
101: REVIAILMQR HIQVDGKVRT DKTYPAGFMD VVSIPKTNEC FRLLYDTKGR FRLHSIKDEE AKFKLCKVRT ISFGQKGIPY LNTYDGRTIR YPDPLIKPND
201: TIKLDLEENK VVEFIKFDVG NVVMVTGGRN RGRVGVIKNR EKHKGSFETI HIQDATGHEF ATRLGNVFTL GKGTKPWVSL PKGKGIKLTI IEEARKRLAA
301: Q

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.