CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G58420.1	Thale cress	mitochondrion	87.5	96.18
CDX70008	Canola	cytosol	89.58	95.91
CDX91445	Canola	cytosol	53.47	95.06
Solyc06g007360.2.1	Tomato	plastid	84.38	92.05
CDY57385	Canola	cytosol, plastid	95.14	91.95
CDX81032	Canola	extracellular	88.89	91.76
CDY58877	Canola	cytosol	88.89	91.76
CDX99006	Canola	extracellular	90.97	90.97
CDY02821	Canola	cytosol	86.46	90.55
CDY60025	Canola	cytosol	89.24	90.18
CDX91447	Canola	cytosol, mitochondrion	15.28	89.8
Solyc02g070360.2.1	Tomato	nucleus	81.94	89.39
PGSC0003DMT400054543	Potato	mitochondrion	81.94	89.39
Solyc02g070330.2.1	Tomato	mitochondrion	81.94	89.39
Solyc02g070340.2.1	Tomato	mitochondrion	81.94	89.39
Solyc02g070350.2.1	Tomato	nucleus, unclear	81.94	89.39
Solyc02g070320.2.1	Tomato	nucleus, unclear	81.6	89.02
CDY14056	Canola	cytosol	89.58	88.66
EER90550	Sorghum	cytosol	81.25	88.64
GSMUA_Achr11P...	Banana	cytosol	75.69	88.26
GSMUA_Achr5P27000_001	Banana	cytosol	75.69	88.26
Solyc04g016350.1.1	Tomato	nucleus, unclear	76.04	87.6
TraesCS1D01G101600.1	Wheat	cytosol	80.21	87.17
TraesCS1A01G092900.1	Wheat	golgi, nucleus	80.21	87.17
TraesCS1B01G120600.1	Wheat	cytosol	80.21	87.17
Os01t0358400-01	Rice	nucleus, plasma membrane	80.21	87.17
HORVU1Hr1G021720.1	Barley	cytosol	80.21	87.17
EES00734	Sorghum	cytosol	80.21	87.17
Os02t0105900-01	Rice	nucleus	79.86	86.79
EES18108	Sorghum	cytosol	78.82	86.31
Os05t0368300-01	Rice	nucleus	77.78	85.17
CDY05015	Canola	cytosol	89.24	84.26
CDY69841	Canola	mitochondrion	90.97	84.24
CDY32700	Canola	extracellular	87.15	83.39
TraesCS1A01G232700.1	Wheat	cytosol	71.53	81.75
PGSC0003DMT400052955	Potato	cytosol	52.78	81.72
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	84.38	78.9
GSMUA_Achr3P23970_001	Banana	cytosol	82.99	78.62
GSMUA_Achr2P01640_001	Banana	cytosol	81.6	75.56
KXG32490	Sorghum	cytosol	34.72	71.94
CDY54450	Canola	cytosol	26.04	61.48
CDY52257	Canola	cytosol, mitochondrion	8.33	58.54
CDY68858	Canola	cytosol	15.97	39.32
CDY04355	Canola	cytosol	21.18	31.12
CDY00352	Canola	cytosol	7.29	16.15
CDY42359	Canola	cytosol	6.94	16.13
CDY71580	Canola	cytosol	6.25	15.25
CDY36197	Canola	cytosol	5.9	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078H539
UniProt:A0A078H539	EnsemblPlants:CDY32986	ProteinID:CDY32986	ProteinID:CDY32986.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00053204001
InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667
PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116
ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e
InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739
UniParc:UPI0004EE2E35	SEG:seg	:	:	:	:

Description

BnaA10g11920D40S ribosomal protein S4 [Source:UniProtKB/TrEMBL;Acc:A0A078H539]

Coordinates

chrLK032304:-:58373..60001

Molecular Weight (calculated)

32696.1 Da

IEP (calculated)

10.662

GRAVY (calculated)

-0.477

Length

288 amino acids

Sequence
(BLAST)

001: MMLICFFSEA GDVESSESEQ RLQTPIMARG LKKHLKRLNA PKHWMLDKLG GAFAPKPSSG PHKSRECLPL VLIIRNRLKY ALTYREVISI LMQRHIQVDG
101: KVRTDKTYPA GFMDVVSIPK TNENFRLLYD TKGRFRLHSI RDEEAKFKLC KVRTIQVGQK GIPYLNTYDG RTIRYPDPLI KPNDTIKLDL EENKIVDSIK
201: FDVGNVVMVT GGRNRGRVGV IKNREKHKGS FETIHIQDST GHEFATRLGN VFTLGKGTKP WVSLPKGKGI KLTIIEEARK RLSGQQAA

Best Arabidopsis Sequence Match ( AT5G07090.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4B40S ribosomal protein S4-2 [Source:UniProtKB/Swiss-Prot;Acc:P49204]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.