Factsheet for PGSC0003DMT400054543

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g070330.2.1	Tomato	mitochondrion	99.62	99.62
Solyc02g070340.2.1	Tomato	mitochondrion	99.62	99.62
Solyc02g070350.2.1	Tomato	nucleus, unclear	99.62	99.62
Solyc02g070320.2.1	Tomato	nucleus, unclear	99.24	99.24
Solyc02g070360.2.1	Tomato	nucleus	99.24	99.24
Solyc04g016350.1.1	Tomato	nucleus, unclear	90.91	96.0
KRH73264	Soybean	endoplasmic reticulum	90.53	90.53
KRH08064	Soybean	nucleus	90.15	90.15
KRH14914	Soybean	nucleus	90.15	90.15
KRH65626	Soybean	nucleus	90.15	90.15
KRH76010	Soybean	endoplasmic reticulum	90.15	90.15
AT5G07090.1	Thale cress	mitochondrion	89.39	90.08
AT5G58420.1	Thale cress	mitochondrion	89.39	90.08
AT2G17360.1	Thale cress	mitochondrion	89.02	90.04
KRH69777	Soybean	endoplasmic reticulum	89.77	89.77
Bra028708.1-P	Field mustard	cytosol	89.02	89.69
VIT_13s0067g01820.t01	Wine grape	cytosol	82.95	89.02
GSMUA_Achr5P27000_001	Banana	cytosol	82.58	88.26
GSMUA_Achr11P...	Banana	cytosol	82.58	88.26
EER90550	Sorghum	cytosol	87.88	87.88
EES18108	Sorghum	cytosol	87.12	87.45
CDX91445	Canola	cytosol	53.41	87.04
CDX70008	Canola	cytosol	88.26	86.62
Os01t0358400-01	Rice	nucleus, plasma membrane	86.74	86.42
EES00734	Sorghum	cytosol	86.74	86.42
Os02t0105900-01	Rice	nucleus	86.36	86.04
Os05t0368300-01	Rice	nucleus	85.61	85.93
TraesCS1B01G120600.1	Wheat	cytosol	85.61	85.28
TraesCS1D01G101600.1	Wheat	cytosol	85.61	85.28
HORVU1Hr1G021720.1	Barley	cytosol	85.61	85.28
TraesCS1A01G092900.1	Wheat	golgi, nucleus	85.61	85.28
CDY58877	Canola	cytosol	88.26	83.51
CDY02821	Canola	cytosol	86.74	83.27
Bra005923.1-P	Field mustard	cytosol	87.88	83.15
CDX81032	Canola	extracellular	87.88	83.15
PGSC0003DMT400052955	Potato	cytosol	58.33	82.8
VIT_08s0058g00390.t01	Wine grape	mitochondrion, plastid	88.26	82.62
CDY60025	Canola	cytosol	89.02	82.46
CDY32986	Canola	cytosol	89.39	81.94
VIT_00s0252g00080.t01	Wine grape	nucleus	33.71	81.65
CDX99006	Canola	extracellular	88.64	81.25
CDY14056	Canola	cytosol	89.39	81.1
TraesCS1A01G232700.1	Wheat	cytosol	76.52	80.16
CDY57385	Canola	cytosol, plastid	89.77	79.53
GSMUA_Achr3P23970_001	Banana	cytosol	90.15	78.29
VIT_06s0004g07150.t01	Wine grape	cytosol	89.02	77.81
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	90.53	77.6
CDX91447	Canola	cytosol, mitochondrion	14.39	77.55
CDY05015	Canola	cytosol	88.64	76.72
VIT_00s0252g00100.t01	Wine grape	cytosol, mitochondrion	26.14	76.67
CDY32700	Canola	extracellular	86.36	75.75
Bra020369.1-P	Field mustard	cytosol	85.98	75.42
GSMUA_Achr2P01640_001	Banana	cytosol	88.64	75.24
CDY69841	Canola	mitochondrion	88.64	75.24
KXG32490	Sorghum	cytosol	39.02	74.1
Zm00001d050009_P001	Maize	plastid	23.48	63.27
KRH04718	Soybean	cytosol	43.94	60.42
KRH04720	Soybean	cytosol, endoplasmic reticulum	44.7	57.84
CDY52257	Canola	cytosol, mitochondrion	8.33	53.66
CDY54450	Canola	cytosol	24.62	53.28
Bra005118.1-P	Field mustard	cytosol	24.62	53.28
Bra033109.1-P	Field mustard	cytosol	17.05	38.46
CDY68858	Canola	cytosol	17.05	38.46
Zm00001d010037_P001	Maize	mitochondrion	15.53	30.6
CDY04355	Canola	cytosol	22.35	30.1
Zm00001d041311_P002	Maize	cytosol, extracellular, nucleus	6.06	18.82
Zm00001d050003_P001	Maize	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane, plastid	7.95	12.8
Zm00001d010387_P001	Maize	plastid	7.58	11.05
Zm00001d049253_P001	Maize	extracellular	4.55	5.56

Protein Annotations

EntrezGene:102587726	EntrezGene:102588047	MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40
InterPro:40S_S4_C	ProteinID:ABB72798	ProteinID:ABB72798.1	ProteinID:CAA54095	ProteinID:CAA54095.1	EMBL:DQ268839
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0019843
GO:GO:0030529	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237	InterPro:KOW	UniProt:M1BWJ0
HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479	PFAM:PF08071
PFAM:PF16121	EnsemblPlantsGene:PGSC0003DMG400021170	PGSC:PGSC0003DMG400021170	EnsemblPlants:PGSC0003DMT400054543	PIRSF:PIRSF002116	ScanProsite:PS00528
PFscan:PS50889	PANTHER:PTHR11581	PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N
InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region	InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00363	SMART:SM00739
UniParc:UPI000294E05F	EMBL:X76651	RefSeq:XP_006352980.1	:	:	:

Description

40S ribosomal protein S4 [Source:PGSC_GENE;Acc:PGSC0003DMG400021170]

Coordinates

chr2:+:29529930..29532698

Molecular Weight (calculated)

29921.8 Da

IEP (calculated)

10.965

GRAVY (calculated)

-0.443

Length

264 amino acids

Sequence
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVIILRN RLKYALTYRE VISILMQRQV MVDGKVRTDK TYPAGFMDVV TIPKTNESFR
101: LLYDTKGRFR LHSLRDEEAK FKLCKVRSVQ FGQKGIPYLN TYDGRTIRYP DPLIKANDTI KLDLDSNKIV DFIKFDVGNV VMVTGGRNRG RVGILKNREK
201: HKGSFETVHI QDSLGHEFAT RLGNVFTLGK GSKPWVSLPK GKGIKLSIIE EARKRMATQS ATTA

Best Arabidopsis Sequence Match ( AT5G58420.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEANKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLASQQ AA

Arabidopsis Description

RPS4D40S ribosomal protein S4-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYK6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.