CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70008	Canola	cytosol	91.32	97.77
AT5G07090.1	Thale cress	mitochondrion	87.15	95.8
CDX91445	Canola	cytosol	53.12	94.44
CDY14056	Canola	cytosol	93.75	92.78
CDX81032	Canola	extracellular	89.58	92.47
CDY58877	Canola	cytosol	89.58	92.47
CDX91447	Canola	cytosol, mitochondrion	15.62	91.84
Solyc06g007360.2.1	Tomato	plastid	84.03	91.67
CDY32986	Canola	cytosol	90.97	90.97
CDY02821	Canola	cytosol	86.11	90.18
CDY60025	Canola	cytosol	88.54	89.47
Solyc02g070360.2.1	Tomato	nucleus	81.6	89.02
Solyc02g070330.2.1	Tomato	mitochondrion	81.6	89.02
Solyc02g070340.2.1	Tomato	mitochondrion	81.6	89.02
Solyc02g070350.2.1	Tomato	nucleus, unclear	81.6	89.02
GSMUA_Achr11P...	Banana	cytosol	76.04	88.66
GSMUA_Achr5P27000_001	Banana	cytosol	76.04	88.66
Solyc02g070320.2.1	Tomato	nucleus, unclear	81.25	88.64
PGSC0003DMT400054543	Potato	mitochondrion	81.25	88.64
EER90550	Sorghum	cytosol	80.9	88.26
CDY05015	Canola	cytosol	93.06	87.87
CDY57385	Canola	cytosol, plastid	90.62	87.58
Solyc04g016350.1.1	Tomato	nucleus, unclear	75.69	87.2
TraesCS1D01G101600.1	Wheat	cytosol	79.86	86.79
TraesCS1A01G092900.1	Wheat	golgi, nucleus	79.86	86.79
TraesCS1B01G120600.1	Wheat	cytosol	79.86	86.79
Os01t0358400-01	Rice	nucleus, plasma membrane	79.86	86.79
HORVU1Hr1G021720.1	Barley	cytosol	79.86	86.79
EES00734	Sorghum	cytosol	79.86	86.79
Os02t0105900-01	Rice	nucleus	79.51	86.42
EES18108	Sorghum	cytosol	78.12	85.55
Os05t0368300-01	Rice	nucleus	77.08	84.41
PGSC0003DMT400052955	Potato	cytosol	53.12	82.26
CDY32700	Canola	extracellular	85.76	82.06
CDY69841	Canola	mitochondrion	88.54	81.99
TraesCS1A01G232700.1	Wheat	cytosol	71.18	81.35
GSMUA_Achr3P00760_001	Banana	cytosol, plasma membrane	85.07	79.55
GSMUA_Achr3P23970_001	Banana	cytosol	83.68	79.28
GSMUA_Achr2P01640_001	Banana	cytosol	81.94	75.88
KXG32490	Sorghum	cytosol	34.72	71.94
CDY54450	Canola	cytosol	26.39	62.3
CDY52257	Canola	cytosol, mitochondrion	8.33	58.54
CDY68858	Canola	cytosol	15.97	39.32
CDY04355	Canola	cytosol	21.18	31.12
CDY00352	Canola	cytosol	7.29	16.15
CDY42359	Canola	cytosol	6.94	16.13
CDY71580	Canola	cytosol	6.25	15.25
CDY36197	Canola	cytosol	5.9	13.18

Protein Annotations

MapMan:17.1.3.1.5	Gene3D:2.30.30.30	Gene3D:2.40.50.740	Gene3D:3.10.290.40	InterPro:40S_S4_C	GO:A0A078ECX0
EnsemblPlants:CDX99006	ProteinID:CDX99006	ProteinID:CDX99006.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00107129001	InterPro:IPR002942	InterPro:IPR014722	InterPro:IPR038237
InterPro:KOW	HAMAP:MF_00485	PFAM:PD002667	PFAM:PF00467	PFAM:PF00900	PFAM:PF01479
PFAM:PF08071	PFAM:PF16121	PIRSF:PIRSF002116	ScanProsite:PS00528	PFscan:PS50889	PANTHER:PTHR11581
PANTHER:PTHR11581:SF11	InterPro:Rib_L2_dom2	InterPro:Ribosomal_S4e	InterPro:Ribosomal_S4e_N	InterPro:Ribosomal_S4e_N_CS	InterPro:Ribosomal_S4e_central_region
InterPro:Ribosomal_S4e_central_sf	InterPro:S4_RNA-bd	SMART:SM00739	UniParc:UPI0004EF051E	SEG:seg	:

Description

BnaC09g48290D

Coordinates

chrLK031907:-:1112654..1114740

Molecular Weight (calculated)

32360.5 Da

IEP (calculated)

10.622

GRAVY (calculated)

-0.459

Length

288 amino acids

Sequence
(BLAST)

001: MKGTSCFVAA AEESEVVVVS SETPANMARG LKKHLKRLNA PKHWDLDKLG GAFAPKPSSG PHKSRECLPL VLIIRNKLKY ALTYREVISI LMQRHIQVDG
101: KVRTDKTYPA GFMDVVSIPK TNENFRLLYD TKGRFRLHSI RDEEAKFKLC KVRTIQVGQK GIPYLNTYDG RTIRYPDPLI KPNDTIKLDL EENKIVDSIK
201: FDVGNVVMVT GGRNRGRVGV IKNREKHKGS FETIHIQDST GHEFATRLGN VFTLGKGTKP WVSLPKGKGI KLTIIEEARK RLSAQQAA

Best Arabidopsis Sequence Match ( AT2G17360.1 )
(BLAST)

001: MARGLKKHLK RLNAPKHWML DKLGGAFAPK PSSGPHKSRE CLPLVLIIRN RLKYALTYRE VISILMQRHI QVDGKVRTDK TYPAGFMDVV SIPKTNENFR
101: LLYDTKGRFR LHSIKDEEAK FKLCKVRSIQ FGQKGIPYLN TYDGRTIRYP DPLIKPNDTI KLDLEENKIV EFIKFDVGNV VMVTGGRNRG RVGVIKNREK
201: HKGSFETIHI QDSTGHEFAT RLGNVYTIGK GTKPWVSLPK GKGIKLTIIE EARKRLSAQQ A

Arabidopsis Description

RPS4A40S ribosomal protein S4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.